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A Bioinformatics-Based Alternative mRNA Splicing Code that May Explain Some Disease Mutations Is Conserved in Animals.Alport syndrome cold cases: Missing mutations identified by exome sequencing and functional analysisCorrelated Evolution of Nucleotide Positions within Splice Sites in Mammals.Sequencing of lariat termini in S. cerevisiae reveals 5' splice sites, branch points, and novel splicing eventsAlignerBoost: A Generalized Software Toolkit for Boosting Next-Gen Sequencing Mapping Accuracy Using a Bayesian-Based Mapping Quality Framework.Global analysis of pre-mRNA subcellular localization following splicing inhibition by spliceostatin A.CircularLogo: A lightweight web application to visualize intra-motif dependencies.Vemurafenib-resistant BRAF selects alternative branch points different from its wild-type BRAF in intron 8 for RNA splicing.Cancer-associated SF3B1 mutations affect alternative splicing by promoting alternative branchpoint usage.Widespread alternative and aberrant splicing revealed by lariat sequencingImproved definition of the mouse transcriptome via targeted RNA sequencingTranscript Isoform Variation Associated with Cytosine Modification in Human Lymphoblastoid Cell LinesCircular RNA has_circ_0067934 is upregulated in esophageal squamous cell carcinoma and promoted proliferation.Splicing repression allows the gradual emergence of new Alu-exons in primate evolutionLessons from non-canonical splicingChromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAsAlternative splicing of U2AF1 reveals a shared repression mechanism for duplicated exons.Cancer-associated SF3B1 mutants recognize otherwise inaccessible cryptic 3' splice sites within RNA secondary structures.BPP: a sequence-based algorithm for branch point prediction.Transcriptomic Characterization of SF3B1 Mutation Reveals Its Pleiotropic Effects in Chronic Lymphocytic Leukemia.SF1 Phosphorylation Enhances Specific Binding to U2AF65 and Reduces Binding to 3'-Splice-Site RNA.Large-scale analysis of branchpoint usage across species and cell lines.Splicing Factor Mutations in Myelodysplasias: Insights from Spliceosome Structures.Arm-specific cleavage and mutation during reverse transcription of 2΄,5΄-branched RNA by Moloney murine leukemia virus reverse transcriptaseIdentification of new branch points and unconventional introns in Saccharomyces cerevisiae.Generation of functionally distinct isoforms of PTBP3 by alternative splicing and translation initiation.A heuristic model for computational prediction of human branch point sequence.Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing.Identification of functional single nucleotide polymorphisms in the branchpoint site.Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks.Machine learning annotation of human branchpoints.50/50 Expressional Odds of Retention Signifies the Distinction between Retained Introns and Constitutively Spliced Introns in Arabidopsis thaliana.Intergenic disease-associated regions are abundant in novel transcripts.Molecular basis of differential 3' splice site sensitivity to anti-tumor drugs targeting U2 snRNP.An Alternative Nested Reading Frame May Participate in the Stress-Dependent Expression of a Plant Gene.Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods.CHARGE syndrome: a recurrent hotspot of mutations in CHD7 IVS25 analyzed by bioinformatic tools and minigene assays.Rules and tools to predict the splicing effects of exonic and intronic mutations.Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus.Most human introns are recognized via multiple and tissue-specific branchpoints.
P2860
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P2860
description
2015 nî lūn-bûn
@nan
2015 թուականի Յունուարին հրատարակուած գիտական յօդուած
@hyw
2015 թվականի հունվարին հրատարակված գիտական հոդված
@hy
2015年の論文
@ja
2015年論文
@yue
2015年論文
@zh-hant
2015年論文
@zh-hk
2015年論文
@zh-mo
2015年論文
@zh-tw
2015年论文
@wuu
name
Genome-wide discovery of human splicing branchpoints
@en
type
label
Genome-wide discovery of human splicing branchpoints
@en
prefLabel
Genome-wide discovery of human splicing branchpoints
@en
P2093
P2860
P50
P356
P1433
P1476
Genome-wide discovery of human splicing branchpoints
@en
P2093
Marion E Brunck
Ryan J Taft
Stacey B Andersen
Tim R Mercer
P2860
P304
P356
10.1101/GR.182899.114
P577
2015-01-05T00:00:00Z