CLICK--topology-independent comparison of biomolecular 3D structures. - Wikidata - awgldk - TriplyDB

CLICK--topology-independent comparison of biomolecular 3D structures.

CLICK--topology-independent comparison of biomolecular 3D structures.

http://www.wikidata.org/entity/Q35075650

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Structural basis for the recruitment of the human CCR4-NOT deadenylase complex by tristetraprolin Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling Multiple Functional Roles of the Accessory I-Domain of Bacteriophage P22 Coat Protein Revealed by NMR Structure and CryoEM Modeling Protruding knob-like proteins violate local symmetries in an icosahedral marine virus.A distinct sodium channel voltage-sensor locus determines insect selectivity of the spider toxin Dc1a Geomfinder: a multi-feature identifier of similar three-dimensional protein patterns: a ligand-independent approach Fast and accurate non-sequential protein structure alignment using a new asymmetric linear sum assignment heuristic Solution Structural Studies of GTP:Adenosylcobinamide-Phosphateguanylyl Transferase (CobY) from Methanocaldococcus jannaschii Computational tools for epitope vaccine design and evaluation De Novo modeling in cryo-EM density maps with Pathwalking.Gorgon and pathwalking: macromolecular modeling tools for subnanometer resolution density maps.A high-affinity protein binder that blocks the IL-6/STAT3 signaling pathway effectively suppresses non-small cell lung cancer.Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins.Structural phylogeny by profile extraction and multiple superimposition using electrostatic congruence as a discriminator.A glycine insertion in the estrogen-related receptor (ERR) is associated with enhanced expression of three cytochrome P450 genes in transgenic Drosophila melanogaster.A Computational Approach towards the Understanding of Plasmodium falciparum Multidrug Resistance Protein 1 MultiSETTER: web server for multiple RNA structure comparison.Constructing and validating initial Cα models from subnanometer resolution density maps with pathwalking Approaching rational epitope vaccine design for hepatitis C virus with meta-server and multivalent scaffolding NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.Identification and Comparative Analysis of H2O2-Scavenging Enzymes (Ascorbate Peroxidase and Glutathione Peroxidase) in Selected Plants Employing Bioinformatics Approaches Insights into a key sulfite scavenger enzyme sulfite oxidase (SOX) gene in plants.Nup358 binds to AGO proteins through its SUMO-interacting motifs and promotes the association of target mRNA with miRISC.In silico analysis of Mn transporters (NRAMP1) in various plant species.Molecular docking of Glycine max and Medicago truncatula ureases with urea; bioinformatics approaches.Influence of hydrophobic and electrostatic residues on SARS-coronavirus S2 protein stability: insights into mechanisms of general viral fusion and inhibitor design.Discovery of Rab1 binding sites using an ensemble of clustering methods.Topology independent comparison of RNA 3D structures using the CLICK algorithm.Terzyme: a tool for identification and analysis of the plant terpenome.SupeRNAlign: a new tool for flexible superposition of homologous RNA structures and inference of accurate structure-based sequence alignments.The interfacial character of antibody paratopes: analysis of antibody-antigen structures.Method to generate highly stable D-amino acid analogs of bioactive helical peptides using a mirror image of the entire PDB.Genome-wide exploration of metal tolerance protein (MTP) genes in common wheat (Triticum aestivum): insights into metal homeostasis and biofortification.BetaSuperposer: superposition of protein surfaces using beta-shapes.Structure-based classification of FAD binding sites: A comparative study of structural alignment tools.Rclick: a web server for comparison of RNA 3D structures.HIF-2α-pVHL complex reveals broad genotype-phenotype correlations in HIF-2α-driven disease

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P2860

CLICK--topology-independent comparison of biomolecular 3D structures.

http://www.wikidata.org/entity/Q35075650

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2011 nî lūn-bûn

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2011 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2011 թվականի մայիսին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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CLICK--topology-independent comparison of biomolecular 3D structures.

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CLICK--topology-independent comparison of biomolecular 3D structures.

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CLICK--topology-independent comparison of biomolecular 3D structures.

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CLICK--topology-independent comparison of biomolecular 3D structures.

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Nucleic Acids Research

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CLICK--topology-independent comparison of biomolecular 3D structures.

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K P Tan

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M N Nguyen

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M S Madhusudhan

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P2860

SISYPHUS--structural alignments for proteins with non-trivial relationships

A computer vision based technique for 3-D sequence-independent structural comparison of proteins

The Protein Data Bank

FATCAT: a web server for flexible structure comparison and structure similarity searching

Searching protein structure databases with DaliLite v.3

SCOP: a structural classification of proteins database for the investigation of sequences and structures

Protein structure comparison by alignment of distance matrices

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

A comprehensive analysis of non-sequential alignments between all protein structures

Residue depth: a novel parameter for the analysis of protein structure and stability.

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10.1093/NAR/GKR393

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