Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing
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Analyses of Intestinal Microbiota: Culture versus Sequencing16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in WildlifeReplication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data.Ectomycorrhizal fungal response to warming is linked to poor host performance at the boreal-temperate ecotone.Ectomycorrhizal fungal spore bank recovery after a severe forest fire: some like it hotEvaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform.Differential Impacts of Land-Based Sources of Pollution on the Microbiota of Southeast Florida Coral ReefsMissing checkerboards? An absence of competitive signal in Alnus-associated ectomycorrhizal fungal communitiesSpore dispersal of basidiomycete fungi at the landscape scale is driven by stochastic and deterministic processes and generates variability in plant-fungal interactions.What goes in must come out: testing for biases in molecular analysis of arbuscular mycorrhizal fungal communities.Dining local: the microbial diet of a snail that grazes microbial communities is geographically structured.Parent material and vegetation influence soil microbial community structure following 30-years of rock weathering and pedogenesis.From benchtop to desktop: important considerations when designing amplicon sequencing workflowsThe role of community and population ecology in applying mycorrhizal fungi for improved food securityEffort versus Reward: Preparing Samples for Fungal Community Characterization in High-Throughput Sequencing Surveys of Soils.Chamber bioaerosol study: outdoor air and human occupants as sources of indoor airborne microbes.Tree diversity and species identity effects on soil fungi, protists and animals are context dependent.Common foliar fungi of Populus trichocarpa modify Melampsora rust disease severity.Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain.Distribution patterns of microbial communities in ultramafic landscape: a metagenetic approach highlights the strong relationships between diversity and environmental traits.Characterization of the resistome in manure, soil and wastewater from dairy and beef production systemsProfile of microbial communities on carbonate stones of the medieval church of San Leonardo di Siponto (Italy) by Illumina-based deep sequencing.Ectomycorrhizal fungal diversity and saprotrophic fungal diversity are linked to different tree community attributes in a field-based tree experiment.The Microbiome and Metabolites in Fermented Pu-erh Tea as Revealed by High-Throughput Sequencing and Quantitative Multiplex Metabolite AnalysisNew Primers for Discovering Fungal Diversity Using Nuclear Large Ribosomal DNA.Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon SequencingWild boars as spore dispersal agents of ectomycorrhizal fungi: consequences for community composition at different habitat types.Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys.Networks Depicting the Fine-Scale Co-Occurrences of Fungi in Soil Horizons.Peptidomic analysis reveals proteolytic activity of kefir microorganisms on bovine milk proteins.Survey of corticioid fungi in North American pinaceous forests reveals hyperdiversity, underpopulated sequence databases, and species that are potentially ectomycorrhizal.DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments.Responses of microbial community from tropical pristine coastal soil to crude oil contaminationResistome diversity in cattle and the environment decreases during beef production.Contribution of Vegetation to the Microbial Composition of Nearby Outdoor AirInvasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem.Exploring the microbiome of healthy and diseased peri-implant sites using Illumina Sequencing.Cohesion: a method for quantifying the connectivity of microbial communities.Opportunities and challenges in metabarcoding approaches for helminth community identification in wild mammals.Forest area and connectivity influence root-associated fungal communities in a fragmented landscape.
P2860
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P2860
Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing
description
2014 nî lūn-bûn
@nan
2014 թուականի Փետրուարին հրատարակուած գիտական յօդուած
@hyw
2014 թվականի փետրվարին հրատարակված գիտական հոդված
@hy
2014年の論文
@ja
2014年論文
@yue
2014年論文
@zh-hant
2014年論文
@zh-hk
2014年論文
@zh-mo
2014年論文
@zh-tw
2014年论文
@wuu
name
Sequence depth, not PCR replic ...... next generation DNA sequencing
@ast
Sequence depth, not PCR replic ...... next generation DNA sequencing
@en
type
label
Sequence depth, not PCR replic ...... next generation DNA sequencing
@ast
Sequence depth, not PCR replic ...... next generation DNA sequencing
@en
prefLabel
Sequence depth, not PCR replic ...... next generation DNA sequencing
@ast
Sequence depth, not PCR replic ...... next generation DNA sequencing
@en
P2860
P1433
P1476
Sequence depth, not PCR replic ...... next generation DNA sequencing
@en
P2093
Dylan P Smith
P2860
P304
P356
10.1371/JOURNAL.PONE.0090234
P407
P50
P577
2014-02-28T00:00:00Z