Critical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble.
about
Understanding nucleic acid-ion interactionsSalt-dependent folding energy landscape of RNA three-way junction.Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding.Extended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion.Theory and Modeling of RNA Structure and Interactions with Metal Ions and Small Molecules.Salt contribution to RNA tertiary structure folding stabilityRiboswitch conformations revealed by small-angle X-ray scattering.From static to dynamic: the need for structural ensembles and a predictive model of RNA folding and functionNew insights into the fundamental role of topological constraints as a determinant of two-way junction conformationIonic strength-dependent persistence lengths of single-stranded RNA and DNA.The ionic atmosphere around A-RNA: Poisson-Boltzmann and molecular dynamics simulations.RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations.Entropic origin of Mg2+-facilitated RNA folding.Electrostatics of nucleic acid folding under conformational constraintMultivalent ion-mediated nucleic acid helix-helix interactions: RNA versus DNA.Ion-mediated RNA structural collapse: effect of spatial confinement.Tuning RNA Flexibility with Helix Length and Junction Sequence.Cation-Anion Interactions within the Nucleic Acid Ion Atmosphere Revealed by Ion Counting.Probing the kinetic and thermodynamic consequences of the tetraloop/tetraloop receptor monovalent ion-binding site in P4-P6 RNA by smFRET.Advances in the determination of nucleic acid conformational ensemblesRole of ion valence in the submillisecond collapse and folding of a small RNA domain.DNA translocation by human uracil DNA glycosylase: role of DNA phosphate charge.Predicting electrostatic forces in RNA folding.Importance of diffuse metal ion binding to RNAMimicking Ribosomal Unfolding of RNA Pseudoknot in a Protein Channel.Crowders perturb the entropy of RNA energy landscapes to favor folding.A repulsive field: advances in the electrostatics of the ion atmosphereEntropic stabilization of folded RNA in crowded solutions measured by SAXS.Do conformational biases of simple helical junctions influence RNA folding stability and specificity?Coarse grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges.An RNA folding motif: GNRA tetraloop-receptor interactions.The solution structural ensembles of RNA kink-turn motifs and their protein complexes.Does Cation Size Affect Occupancy and Electrostatic Screening of the Nucleic Acid Ion Atmosphere?Comparison of monovalent and divalent ion distributions around a DNA duplex with molecular dynamics simulation and a Poisson-Boltzmann approach.Ion competition in condensed DNA arrays in the attractive regime.Probing the dynamics of the P1 helix within the Tetrahymena group I intron.Determination of Ion Atmosphere Effects on the Nucleic Acid Electrostatic Potential and Ligand Association Using AH+·C Wobble Formation in Double-Stranded DNA.
P2860
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P2860
Critical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble.
description
2008 nî lūn-bûn
@nan
2008 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
Critical assessment of nucleic ...... of an unfolded state ensemble.
@ast
Critical assessment of nucleic ...... of an unfolded state ensemble.
@en
type
label
Critical assessment of nucleic ...... of an unfolded state ensemble.
@ast
Critical assessment of nucleic ...... of an unfolded state ensemble.
@en
prefLabel
Critical assessment of nucleic ...... of an unfolded state ensemble.
@ast
Critical assessment of nucleic ...... of an unfolded state ensemble.
@en
P2093
P2860
P356
P1476
Critical assessment of nucleic ...... of an unfolded state ensemble.
@en
P2093
Daniel Herschlag
Vijay S Pande
Vincent B Chu
P2860
P304
12334-12341
P356
10.1021/JA800854U
P407
P577
2008-08-23T00:00:00Z