BRENDA in 2015: exciting developments in its 25th year of existence - Wikidata - awgldk - TriplyDB

BRENDA in 2015: exciting developments in its 25th year of existence

BRENDA in 2015: exciting developments in its 25th year of existence

http://www.wikidata.org/entity/Q35253488

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Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes BacDive – The Bacterial Diversity Metadatabase in 2016 Common Amino Acid Subsequences in a Universal Proteome--Relevance for Food Science Reaction Decoder Tool (RDT): extracting features from chemical reactions Effects of Glycosylation on the Enzymatic Activity and Mechanisms of Proteases Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis Modeling Rice Metabolism: From Elucidating Environmental Effects on Cellular Phenotype to Guiding Crop Improvement Internet Databases of the Properties, Enzymatic Reactions, and Metabolism of Small Molecules-Search Options and Applications in Food Science EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation BRENDA in 2017: new perspectives and new tools in BRENDA.Protein Bioinformatics Databases and Resources.PDBe: improved accessibility of macromolecular structure data from PDB and EMDB Integration of systems glycobiology with bioinformatics toolboxes, glycoinformatics resources, and glycoproteomics data.HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data.Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes.The SwissLipids knowledgebase for lipid biology.Investigating the Role of TNF-α and IFN-γ Activation on the Dynamics of iNOS Gene Expression in LPS Stimulated Macrophages The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize.Comparative analysis of sterol acquisition in the oomycetes Saprolegnia parasitica and Phytophthora infestans.Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism.Predictive Modeling of Drug Treatment in the Area of Personalized Medicine.Development of a core Clostridium thermocellum kinetic metabolic model consistent with multiple genetic perturbations Experimental and Metabolic Modeling Evidence for a Folate-Cleaving Side-Activity of Ketopantoate Hydroxymethyltransferase (PanB).The genome of Onchocerca volvulus, agent of river blindness.Identification of drug candidates and repurposing opportunities through compound-target interaction networks.Computational resources and strategies to construct single-molecule metabolic models of microbial cells.biochem4j: Integrated and extensible biochemical knowledge through graph databases.Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus.A synthetic pathway for the fixation of carbon dioxide in vitro.Using the MEROPS Database for Investigation of Lysosomal Peptidases, Their Inhibitors, and Substrates.Complementary Sources of Protein Functional Information: The Far Side of GO.Elevated Values of Clinically Relevant Transferases Induced by Imported Infectious Diseases: A Controlled Cross-Sectional Study of 14,559 Diseased German Travelers Returning from the Tropics and Subtropics.The Oxidosqualene Cyclase from the Oomycete Saprolegnia parasitica Synthesizes Lanosterol as a Single Product.Large-scale computational models of liver metabolism: How far from the clinics?Arabidopsis TH2 Encodes the Orphan Enzyme Thiamin Monophosphate Phosphatase.Highlighting the Need for Systems-Level Experimental Characterization of Plant Metabolic Enzymes A Caenorhabditis elegans Genome-Scale Metabolic Network Model.The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.Genome-Scale Architecture of Small Molecule Regulatory Networks and the Fundamental Trade-Off between Regulation and Enzymatic Activity.Is systems pharmacology ready to impact upon therapy development? A study on the cholesterol biosynthesis pathway.

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P2860

BRENDA in 2015: exciting developments in its 25th year of existence

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2014 nî lūn-bûn

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2014 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2014 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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BRENDA in 2015: exciting developments in its 25th year of existence

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BRENDA in 2015: exciting developments in its 25th year of existence

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BRENDA in 2015: exciting developments in its 25th year of existence

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BRENDA in 2015: exciting developments in its 25th year of existence

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BRENDA in 2015: exciting developments in its 25th year of existence

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Nucleic Acids Research

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BRENDA in 2015: exciting developments in its 25th year of existence

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P2093

Antje Chang

http://www.w3.org/2001/XMLSchema#string

Ida Schomburg

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Lisa Jeske

http://www.w3.org/2001/XMLSchema#string

Marcus Ulbrich

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Mei Xiao

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Sandra Placzek

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P2860

Database resources of the National Center for Biotechnology Information

HMMER web server: interactive sequence similarity searching

PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species

The RCSB Protein Data Bank: redesigned web site and web services

BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009

Basic local alignment search tool

Pfam: the protein families database

The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments

The NCBI Taxonomy database

Update on activities at the Universal Protein Resource (UniProt) in 2013

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D439-46

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10.1093/NAR/GKU1068

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Database issue

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43

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Dietmar Schomburg

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2014-11-05T00:00:00Z

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267931444

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25378310

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4383907

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