Sparse and compositionally robust inference of microbial ecological networks
about
Tracking Strains in the Microbiome: Insights from Metagenomics and ModelsMicrobial interactions and community assembly at microscalesToward Accurate and Quantitative Comparative MetagenomicsChanges in the Structure of the Microbial Community Associated with Nannochloropsis salina following Treatments with Antibiotics and Bioactive CompoundsMetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles.Investigating microbial co-occurrence patterns based on metagenomic compositional data.Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data.Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation.Helminth infection promotes colonization resistance via type 2 immunity.Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet.Multifaceted Interfaces of Bacterial Competition.Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes.MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial Communities.Networks Depicting the Fine-Scale Co-Occurrences of Fungi in Soil Horizons.Cross-biome comparison of microbial association networks.A phylogenetic transform enhances analysis of compositional microbiota dataInferring interactions in complex microbial communities from nucleotide sequence data and environmental parameters.GeneSPIDER - gene regulatory network inference benchmarking with controlled network and data properties.gCoda: Conditional Dependence Network Inference for Compositional Data.Boolean analysis reveals systematic interactions among low-abundance species in the human gut microbiome.Networking in the Plant Microbiome.Restructuring of Epibacterial Communities on Fucus vesiculosus forma mytili in Response to Elevated pCO2 and Increased Temperature Levels.Network modules and hubs in plant-root fungal biomesLongitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection.Balance Trees Reveal Microbial Niche Differentiation.Oxalobacter formigenes-associated host features and microbial community structures examined using the American Gut Project.Integrated Analysis of Biopsies from Inflammatory Bowel Disease Patients Identifies SAA1 as a Link Between Mucosal Microbes with TH17 and TH22 Cells.Modeling time-series data from microbial communities.Ecological Network Inference From Long-Term Presence-Absence DataTaxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows.Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategiesMucosa-associated biohydrogenating microbes protect the simulated colon microbiome from stress associated with high concentrations of poly-unsaturated fat.Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children.Deciphering the Pathobiome: Intra- and Interkingdom Interactions Involving the Pathogen Erysiphe alphitoides.A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity.The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy Young.Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing.Rapid regrowth and detection of microbial contaminants in equine fecal microbiome samples.Early diverging lineages within Cryptomycota and Chytridiomycota dominate the fungal communities in ice-covered lakes of the McMurdo Dry Valleys, Antarctica.Location, Root Proximity, and Glyphosate-Use History Modulate the Effects of Glyphosate on Fungal Community Networks of Wheat.
P2860
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P2860
Sparse and compositionally robust inference of microbial ecological networks
description
2015 nî lūn-bûn
@nan
2015年の論文
@ja
2015年論文
@yue
2015年論文
@zh-hant
2015年論文
@zh-hk
2015年論文
@zh-mo
2015年論文
@zh-tw
2015年论文
@wuu
2015年论文
@zh
2015年论文
@zh-cn
name
Sparse and compositionally robust inference of microbial ecological networks
@ast
Sparse and compositionally robust inference of microbial ecological networks
@en
type
label
Sparse and compositionally robust inference of microbial ecological networks
@ast
Sparse and compositionally robust inference of microbial ecological networks
@en
prefLabel
Sparse and compositionally robust inference of microbial ecological networks
@ast
Sparse and compositionally robust inference of microbial ecological networks
@en
P2093
P2860
P1476
Sparse and compositionally robust inference of microbial ecological networks
@en
P2093
Christian L Müller
Dan R Littman
Emily R Miraldi
Richard A Bonneau
Zachary D Kurtz
P2860
P304
P356
10.1371/JOURNAL.PCBI.1004226
P577
2015-05-07T00:00:00Z