Automated prediction of protein association rate constants.
about
Modeling protein association mechanisms and kineticsA common model for cytokine receptor activation: combined scissor-like rotation and self-rotation of receptor dimer induced by class I cytokineComputational support for a scaffolding mechanism of centriole assembly.Accelerating the Association of the Most Stable Protein-Ligand Complex by More than Two Orders of MagnitudeIntradimer/Intermolecular interactions suggest autoinhibition mechanism in endophilin A1Electrostatics, structure prediction, and the energy landscapes for protein folding and binding.Modeling disordered protein interactions from biophysical principlesPI(2)PE: A Suite of Web Servers for Predictions Ranging From Protein Structure to Binding Kinetics.An HMM-based algorithm for evaluating rates of receptor-ligand binding kinetics from thermal fluctuation data.Energetic evaluation of binding modes in the C3d and Factor H (CCP 19-20) complex.Predicting Protein-protein Association Rates using Coarse-grained Simulation and Machine Learning.Computational and experimental approaches to reveal the effects of single nucleotide polymorphisms with respect to disease diagnosticsSlow, reversible, coupled folding and binding of the spectrin tetramerization domain.Folding and binding of an intrinsically disordered protein: fast, but not 'diffusion-limited'.Prediction and dissection of widely-varying association rate constants of actin-binding proteinsDistinct mechanisms of a phosphotyrosyl peptide binding to two SH2 domainsGlobal analysis of ion dependence unveils hidden steps in DNA binding and bending by integration host factor.How structure defines affinity in protein-protein interactions.Rate constants and mechanisms of intrinsically disordered proteins binding to structured targetsElectrostatically accelerated coupled binding and folding of intrinsically disordered proteinsContrasting factors on the kinetic path to protein complex formation diminish the effects of crowding agents.Low-stringency selection of TEM1 for BLIP shows interface plasticity and selection for faster binders.A method for computing association rate constants of atomistically represented proteins under macromolecular crowding.Selection is more intelligent than design: improving the affinity of a bivalent ligand through directed evolution.Electrostatics control actin filament nucleation and elongation kinetics.Mechanism and rate constants of the Cdc42 GTPase binding with intrinsically disordered effectors.Simulation and Modeling of Crowding Effects on the Thermodynamic and Kinetic Properties of Proteins with Atomic Details.Multiscaled exploration of coupled folding and binding of an intrinsically disordered molecular recognition element in measles virus nucleoprotein.Allosteric activation of SENP1 by SUMO1 β-grasp domain involves a dock-and-coalesce mechanism.The role of protonation states in ligand-receptor recognition and binding.On the binding affinity of macromolecular interactions: daring to ask why proteins interact.Challenges in structural approaches to cell modeling.Rate Constants and Mechanisms of Protein-Ligand Binding.A Computational Model for Kinetic Studies of Cadherin Binding and Clustering.Intrinsic disorder: signaling via highly specific but short-lived association.webSDA: a web server to simulate macromolecular diffusional association.Contacts-based prediction of binding affinity in protein-protein complexes.Protein flexibility, not disorder, is intrinsic to molecular recognition.Using the concept of transient complex for affinity predictions in CAPRI rounds 20-27 and beyond.Studying protein assembly with reversible Brownian dynamics of patchy particles.
P2860
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P2860
Automated prediction of protein association rate constants.
description
2011 nî lūn-bûn
@nan
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
2011年论文
@zh
2011年论文
@zh-cn
name
Automated prediction of protein association rate constants.
@ast
Automated prediction of protein association rate constants.
@en
type
label
Automated prediction of protein association rate constants.
@ast
Automated prediction of protein association rate constants.
@en
prefLabel
Automated prediction of protein association rate constants.
@ast
Automated prediction of protein association rate constants.
@en
P2860
P1433
P1476
Automated prediction of protein association rate constants
@en
P2093
Xiaodong Pang
P2860
P304
P356
10.1016/J.STR.2011.10.015
P577
2011-12-01T00:00:00Z