RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures. - Wikidata - awgldk - TriplyDB

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.

http://www.wikidata.org/entity/Q35621422

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RNA folding pathways in stop motion.Blind tests of RNA nearest-neighbor energy prediction 3D RNA and Functional Interactions from Evolutionary Couplings Quantifying side-chain conformational variations in protein structure Classification of RNA structure change by 'gazing' at experimental data.Consistent global structures of complex RNA states through multidimensional chemical mapping.RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Using sequence signatures and kink-turn motifs in knowledge-based statistical potentials for RNA structure prediction.Theory and Modeling of RNA Structure and Interactions with Metal Ions and Small Molecules.Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction.SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction.Primerize: automated primer assembly for transcribing non-coding RNA domains.A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs.A glyS T-box riboswitch with species-specific structural features responding to both proteinogenic and nonproteinogenic tRNAGly isoacceptors.Structures and Energetics of Four Adjacent G·U Pairs That Stabilize an RNA Helix.Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs.SimRNAweb: a web server for RNA 3D structure modeling with optional restraints.Protocols for Molecular Modeling with Rosetta3 and RosettaScripts Genome-scale characterization of RNA tertiary structures and their functional impact by RNA solvent accessibility prediction.Progress and Current Challenges in Modeling Large RNAs.RNA structure through multidimensional chemical mapping.Bridging the gap between in vitro and in vivo RNA folding.One-bead coarse-grained model for RNA dynamics.Analysis of RNA structure using small-angle X-ray scattering.Modeling Small Noncanonical RNA Motifs with the Rosetta FARFAR Server.Modular calibrant sets for the structural analysis of nucleic acids by ion mobility spectrometry mass spectrometry.RNA structure inference through chemical mapping after accidental or intentional mutations.Revisiting GNRA and UNCG folds: U-turns versus Z-turns in RNA hairpin loops.Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide-nucleotide interactions from direct coupling analysis.Structural signatures of thermal adaptation of bacterial ribosomal RNA, transfer RNA, and messenger RNA.Structures to the people!A critical base pair in k-turns determines the conformational class adopted, and correlates with biological function.Modelling the three-dimensional structure of the right-terminal domain of pospiviroids.Exploring RNA conformational space under sparse distance restraints.RNA Binding: Getting Specific about Specificity.RNA Structural Modules Control the Rate and Pathway of RNA Folding and Assembly.Investigating DNA-, RNA-, and protein-based features as a means to discriminate pathogenic synonymous variants.Updates to the RNA mapping database (RMDB), version 2.Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs.

P2860

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P2860

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.

http://www.wikidata.org/entity/Q35621422

description

2015 nî lūn-bûn

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2015年の論文

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2015年論文

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2015年論文

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2015年論文

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2015年論文

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2015年論文

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2015年论文

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2015年论文

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2015年论文

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name

RNA-Puzzles Round II: assessme ...... to three large RNA structures.

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RNA-Puzzles Round II: assessme ...... to three large RNA structures.

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RNA-Puzzles Round II: assessme ...... to three large RNA structures.

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RNA-Puzzles Round II: assessme ...... to three large RNA structures.

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RNA-Puzzles Round II: assessme ...... to three large RNA structures.

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RNA-Puzzles Round II: assessme ...... to three large RNA structures.

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P1476

RNA-Puzzles Round II: assessme ...... to three large RNA structures.

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P2093

Adrian R Ferré-D'Amaré

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Andrey Krokhotin

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Arpit Tandon

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Benoît Masquida

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Clarence Cheng

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Fang-Chieh Chou

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François Major

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Grzegorz Chojnowski

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Grzegorz Lach

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Jian Wang

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P2860

The distributions, mechanisms, and structures of metabolite-binding riboswitches

Mfold web server for nucleic acid folding and hybridization prediction

The Protein Data Bank

Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

RNAstructure: software for RNA secondary structure prediction and analysis

Automated 3D structure composition for large RNAs

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Molecular modelling of the GIR1 branching ribozyme gives new insight into evolution of structurally related ribozymes

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1066-1084

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P31

scholarly article

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10.1261/RNA.049502.114

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6

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21

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P50

Janusz Bujnicki

Marta Szachniuk

Ryszard Adamiak

Katarzyna Purzycka

Stanislaw Dunin-Horkawicz

Nikolay V. Dokholyan

Alexander Serganov

P577

2015-04-16T00:00:00Z

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275050525

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25883046

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4436661

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