GeneSigDB: a manually curated database and resource for analysis of gene expression signatures - Wikidata - awgldk - TriplyDB

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

http://www.wikidata.org/entity/Q35630836

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Reuse of public genome-wide gene expression data Analyse multiple disease subtypes and build associated gene networks using genome-wide expression profiles.Multiscale integration of -omic, imaging, and clinical data in biomedical informatics.Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data.NFPscanner: a webtool for knowledge-based deciphering of biomedical networks BioPlat: a software for human cancer biomarker discovery LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures.Multi-edge gene set networks reveal novel insights into global relationships between biological themes.PAGED: a pathway and gene-set enrichment database to enable molecular phenotype discoveries.Prediction of disease-related genes based on weighted tissue-specific networks by using DNA methylation Steiner tree methods for optimal sub-network identification: an empirical study.Age-specific gene expression signatures for breast tumors and cross-species conserved potential cancer progression markers in young women Transfer of clinically relevant gene expression signatures in breast cancer: from Affymetrix microarray to Illumina RNA-Sequencing technology.Ensemble of gene signatures identifies novel biomarkers in colorectal cancer activated through PPARγ and TNFα signaling Evaluation and validation of a robust single cell RNA-amplification protocol through transcriptional profiling of enriched lung cancer initiating cells.Genome-wide methylation and gene expression changes in newborn rats following maternal protein restriction and reversal by folic acid iRegulon: from a gene list to a gene regulatory network using large motif and track collections.Resistance to everolimus driven by epigenetic regulation of MYC in ER+ breast cancers.Multiple signatures of a disease in potential biomarker space: Getting the signatures consensus and identification of novel biomarkers.Comparing Platforms for Messenger RNA Expression Profiling of Archival Formalin-Fixed, Paraffin-Embedded Tissues.Profiling of Discrete Gynecological Cancers Reveals Novel Transcriptional Modules and Common Features Shared by Other Cancer Types and Embryonic Stem Cells.Finding New Order in Biological Functions from the Network Structure of Gene Annotations.Molecular portrait of breast cancer in China reveals comprehensive transcriptomic likeness to Caucasian breast cancer and low prevalence of luminal A subtype.PAGER: constructing PAGs and new PAG-PAG relationships for network biology.Combined clinical and genomic signatures for the prognosis of early stage non-small cell lung cancer based on gene copy number alterations Aging-like changes in the transcriptome of irradiated microglia iBBiG: iterative binary bi-clustering of gene sets.Efficient Test and Visualization of Multi-Set Intersections The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins.Discovering high-resolution patterns of differential DNA methylation that correlate with gene expression changes omniBiomarker: A Web-Based Application for Knowledge-Driven Biomarker Identification The Role of Proliferation in Determining Response to Neoadjuvant Chemotherapy in Breast Cancer: A Gene Expression-Based Meta-Analysis.Bronchial airway gene expression in smokers with lung or head and neck cancer.Detecting gene signature activation in breast cancer in an absolute, single-patient manner.Applications of systems biology in cancer immunotherapy: from target discovery to biomarkers of clinical outcome.Proteomics for systems toxicology.Empirical extensions of the lasso penalty to reduce the false discovery rate in high-dimensional Cox regression models.pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis.Persistent androgen receptor-mediated transcription in castration-resistant prostate cancer under androgen-deprived conditions.iRegulon and i-cisTarget: Reconstructing Regulatory Networks Using Motif and Track Enrichment.

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GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

http://www.wikidata.org/entity/Q35630836

description

2011 nî lūn-bûn

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Nucleic Acids Research

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Anne-Alyssa St Pierre

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Caroline Kelly

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Enzo N Martinelli

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Gerald Papenhausen

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Kermshlise C Picard

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Markus S Schröder

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Mick Correll

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Misha Kapushesky

http://www.w3.org/2001/XMLSchema#string

Niall O'Connor

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Shaita C Picard

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

NCBI GEO: archive for functional genomics data sets--10 years on

Gene expression atlas at the European bioinformatics institute

Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics

Reactome: a database of reactions, pathways and biological processes

Mutational analysis of gene families in human cancer

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

Multidimensional gene set analysis of genomic data

Analyzing gene expression data in terms of gene sets: methodological issues.

Gene set enrichment in eQTL data identifies novel annotations and pathway regulators.

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10.1093/NAR/GKR901

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40

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Benjamin Haibe-Kains

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John Quackenbush

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2011-11-21T00:00:00Z

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22110038

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