FungiDB: an integrated functional genomics database for fungi - Wikidata - awgldk - TriplyDB

FungiDB: an integrated functional genomics database for fungi

FungiDB: an integrated functional genomics database for fungi

http://www.wikidata.org/entity/Q35631094

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The roles of zinc and copper sensing in fungal pathogenesis The Pathogen-Host Interactions database (PHI-base): additions and future developments The Immunoreactive Exo-1,3-β-Glucanase from the Pathogenic Oomycete Pythium insidiosum Is Temperature Regulated and Exhibits Glycoside Hydrolase Activity Metadata Analysis of Phanerochaete chrysosporium Gene Expression Data Identified Common CAZymes Encoding Gene Expression Profiles Involved in Cellulose and Hemicellulose Degradation Gene Expression and Silencing Studies in Phytophthora infestans Reveal Infection-Specific Nutrient Transporters and a Role for the Nitrate Reductase Pathway in Plant Pathogenesis Investigating Conservation of the Cell-Cycle-Regulated Transcriptional Program in the Fungal Pathogen, Cryptococcus neoformans Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.SilkPathDB: a comprehensive resource for the study of silkworm pathogens.Distinctive Nuclear Localization Signals in the Oomycete Phytophthora sojae.Online Databases for Taxonomy and Identification of Pathogenic Fungi and Proposal for a Cloud-Based Dynamic Data Network Platform.PpMID1 Plays a Role in the Asexual Development and Virulence of Phytophthora parasitica Literature-based gene curation and proposed genetic nomenclature for cryptococcus.EuPathDB: the eukaryotic pathogen database.Unisexual reproduction reverses Muller's ratchet Databases for Microbiologists A non-canonical RNA silencing pathway promotes mRNA degradation in basal Fungi Novel and unique domains in aminoacyl-tRNA synthetases from human fungal pathogens Aspergillus niger, Candida albicans and Cryptococcus neoformans.A simple method for semi-random DNA amplicon fragmentation using the methylation-dependent restriction enzyme MspJI.Essential gene discovery in the basidiomycete Cryptococcus neoformans for antifungal drug target prioritization Impact of Protein Palmitoylation on the Virulence Potential of Cryptococcus neoformans.Comparisons of Ribosomal Protein Gene Promoters Indicate Superiority of Heterologous Regulatory Sequences for Expressing Transgenes in Phytophthora infestans.Fungal biodiversity to biotechnology.Gene Network Polymorphism Illuminates Loss and Retention of Novel RNAi Silencing Components in the Cryptococcus Pathogenic Species Complex Control of mRNA Stability in Fungi by NMD, EJC and CBC Factors Through 3'UTR Introns A Tool Set for the Genome-Wide Analysis of Neurospora crassa by RT-PCR.Glycoside hydrolases family 20 (GH20) represent putative virulence factors that are shared by animal pathogenic oomycetes, but are absent in phytopathogens.Integrated Activity and Genetic Profiling of Secreted Peptidases in Cryptococcus neoformans Reveals an Aspartyl Peptidase Required for Low pH Survival and Virulence.A fast and robust protocol for metataxonomic analysis using RNAseq data.Landscape of genomic diversity and host adaptation in Fusarium graminearum Connecting virulence pathways to cell-cycle progression in the fungal pathogen Cryptococcus neoformans Increase of Fungal Pathogenicity and Role of Plant Glutamine in Nitrogen-Induced Susceptibility (NIS) To Rice Blast Elucidation of the calcineurin-Crz1 stress response transcriptional network in the human fungal pathogen Cryptococcus neoformans The function and evolution of the Aspergillus genome.Deacetylation of Fungal Exopolysaccharide Mediates Adhesion and Biofilm Formation.Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles.Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression EuPathDB: the eukaryotic pathogen genomics database resource.The Cryptococcus neoformans transcriptome at the site of human meningitis.Discovering functions of unannotated genes from a transcriptome survey of wild fungal isolates.Fungal genome sequencing: basic biology to biotechnology.

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FungiDB: an integrated functional genomics database for fungi

http://www.wikidata.org/entity/Q35631094

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name

FungiDB: an integrated functional genomics database for fungi

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FungiDB: an integrated functional genomics database for fungi

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FungiDB: an integrated functional genomics database for fungi

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Nucleic Acids Research

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FungiDB: an integrated functional genomics database for fungi

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Brian P Brunk

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Chris J Stoeckert

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Deborah F Pinney

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John Brestelli

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Steve Fischer

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Vishal Nayak

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Wei Li

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P2860

Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

The diploid genome sequence of Candida albicans

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus

Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

The genome sequence of the rice blast fungus Magnaporthe grisea

The genome sequence of the filamentous fungus Neurospora crassa

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D675-81

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10.1093/NAR/GKR918

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Database issue

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40

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Jason E. Stajich

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51778788

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3245123

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