BarraCUDA - a fast short read sequence aligner using graphics processing units
about
Alignment of Short Reads: A Crucial Step for Application of Next-Generation Sequencing Data in Precision MedicineHigh throughput sequencing approaches to mutation discovery in the mouseMaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequenceSOAP3-dp: fast, accurate and sensitive GPU-based short read alignerToward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflowG-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods.SparkBWA: Speeding Up the Alignment of High-Throughput DNA Sequencing Data.Short Read Mapping: An Algorithmic Tour.A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units.GPU-BSM: a GPU-based tool to map bisulfite-treated reads.Fast inexact mapping using advanced tree exploration on backward search methodsMICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC+.Removing duplicate reads using graphics processing units.Exploiting GPUs in virtual machine for BioCloudComparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations.Accelerating Wright-Fisher Forward Simulations on the Graphics Processing Unit.Graphics processing units in bioinformatics, computational biology and systems biology.sBWT: memory efficient implementation of the hardware-acceleration-friendly Schindler transform for the fast biological sequence mapping.Genetically improved BarraCUDA.Sequence alignment tools: one parallel pattern to rule them all?Massively parallel read mapping on GPUs with the q-group index and PEANUT.Challenges in the Setup of Large-scale Next-Generation Sequencing Analysis Workflows.Analysis of DNA modifications in aging research.Improving CUDA DNA Analysis Software with Genetic Programming
P2860
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P2860
BarraCUDA - a fast short read sequence aligner using graphics processing units
description
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name
BarraCUDA - a fast short read sequence aligner using graphics processing units
@ast
BarraCUDA - a fast short read sequence aligner using graphics processing units
@en
type
label
BarraCUDA - a fast short read sequence aligner using graphics processing units
@ast
BarraCUDA - a fast short read sequence aligner using graphics processing units
@en
prefLabel
BarraCUDA - a fast short read sequence aligner using graphics processing units
@ast
BarraCUDA - a fast short read sequence aligner using graphics processing units
@en
P2093
P2860
P356
P1433
P1476
BarraCUDA - a fast short read sequence aligner using graphics processing units
@en
P2093
Brian Yh Lam
Dag Lyberg
Graham Pullan
Ian McFarlane
Ming Sin Cheung
P2860
P2888
P356
10.1186/1756-0500-5-27
P577
2012-01-13T00:00:00Z
P5875
P6179
1052295320