Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes. - Wikidata - awgldk - TriplyDB

Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes.

Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes.

http://www.wikidata.org/entity/Q35786908

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MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes Hepatic to pancreatic switch defines a role for hemostatic factors in cellular plasticity in mice Activation of IKKalpha target genes depends on recognition of specific kappaB binding sites by RelB:p52 dimers Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage Regulation of myeloid leukaemia by the cell-fate determinant Musashi An integrated database of genes responsive to the Myc oncogenic transcription factor: identification of direct genomic targets Microarray and comparative genomics-based identification of genes and gene regulatory regions of the mouse immune system CisMols Analyzer: identification of compositionally similar cis-element clusters in ortholog conserved regions of coordinately expressed genes.Ro-associated Y RNAs in metazoans: evolution and diversification Toucan: deciphering the cis-regulatory logic of coregulated genes.Computational strategies for analyzing data in gene expression microarray experiments.Making mechanistic connections between cell signaling pathways and pathological endpoints.Transcription factor map alignment of promoter regions.DiRE: identifying distant regulatory elements of co-expressed genes.MicroRNA-21 is up-regulated in allergic airway inflammation and regulates IL-12p35 expression.Xenopus as a model system to study transcriptional regulatory networks.MicroRNA-21 regulates the self-renewal of mouse spermatogonial stem cells Phylogenetic footprinting reveals evolutionarily conserved regions of the gonadotropin-releasing hormone gene that enhance cell-specific expression.Twist1 directly regulates genes that promote cell proliferation and migration in developing heart valves Epigenetic regulation of the IL-13-induced human eotaxin-3 gene by CREB-binding protein-mediated histone 3 acetylation.A strategy for identifying transcription factor binding sites reveals two classes of genomic c-Myc target sites.Two potential hookworm DAF-16 target genes, SNR-3 and LPP-1: gene structure, expression profile, and implications of a cis-regulatory element in the regulation of gene expression.Computational approaches to identify promoters and cis-regulatory elements in plant genomes.CisMiner: genome-wide in-silico cis-regulatory module prediction by fuzzy itemset mining.Central role of Muc5ac expression in mucous metaplasia and its regulation by conserved 5' elements Evaluation of myc E-box phylogenetic footprints in glycolytic genes by chromatin immunoprecipitation assays.Dynamic SPR monitoring of yeast nuclear protein binding to a cis-regulatory element Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat Cardiac-specific inducible and conditional gene targeting in mice.PATZ1 interacts with p53 and regulates expression of p53-target genes enhancing apoptosis or cell survival based on the cellular context.Pattern of sequence variation across 213 environmental response genes.Novel resequencing chip customized to diagnose mutations in patients with inherited syndromes of intrahepatic cholestasis CONFAC: automated application of comparative genomic promoter analysis to DNA microarray datasets.Microarray-based discovery of highly expressed olfactory mucosal genes: potential roles in the various functions of the olfactory system.Footer: a quantitative comparative genomics method for efficient recognition of cis-regulatory elements.CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.Distinguishing regulatory DNA from neutral sites.PATZ1 is a new prognostic marker of glioblastoma associated with the stem-like phenotype and enriched in the proneural subtype.GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs.Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules

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Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes.

http://www.wikidata.org/entity/Q35786908

description

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Andrew T Pinski

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Bruce J Aronow

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James W Carman

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P2860

Basic Krüppel-like factor functions within a network of interacting haematopoietic transcription factors

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins

Genome-wide location and function of DNA binding proteins

Hemogen is a novel nuclear factor specifically expressed in mouse hematopoietic development and its human homologue EDAG maps to chromosome 9q22, a region containing breakpoints of hematological neoplasms

A conserved sequence in the immunoglobulin J kappa-C kappa intron: possible enhancer element

Uroporphyrinogen III synthase erythroid promoter mutations in adjacent GATA1 and CP2 elements cause congenital erythropoietic porphyria

PipMaker--a web server for aligning two genomic DNA sequences

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data

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