Library preparation methodology can influence genomic and functional predictions in human microbiome research - Wikidata - awgldk - TriplyDB

Library preparation methodology can influence genomic and functional predictions in human microbiome research

Library preparation methodology can influence genomic and functional predictions in human microbiome research

http://www.wikidata.org/entity/Q35825456

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The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report Next generation sequencing data of a defined microbial mock community.Toward Accurate and Quantitative Comparative Metagenomics Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies Potential and active functions in the gut microbiota of a healthy human cohort Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis.Adjusting microbiome profiles for differences in microbial load by spike-in bacteria Contamination-controlled high-throughput whole genome sequencing for influenza A viruses using the MiSeq sequencer.Paucibacterial Microbiome and Resident DNA Virome of the Healthy Conjunctiva.High-throughput automated microfluidic sample preparation for accurate microbial genomics.MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments.A comparison of sedimentary DNA and pollen from lake sediments in recording vegetation composition at the Siberian treeline.Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease.Decoding molecular interactions in microbial communities.High-resolution characterization of the human microbiome.Microbial community assembly and evolution in subseafloor sediment.Microbiological diagnosis of device-related biofilm infections.Shifts in the Fecal Microbiota Associated with Adenomatous Polyps.A robust ambient temperature collection and stabilization strategy: Enabling worldwide functional studies of the human microbiome.Shotgun metagenomics, from sampling to analysis.A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome Towards standards for human fecal sample processing in metagenomic studies.Library Construction from Subnanogram DNA for Pelagic Sea Water and Deep-Sea Sediments.Surveillance of Foodborne Pathogens: Towards Diagnostic Metagenomics of Fecal Samples.Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing.Recent insights into the tick microbiome gained through next-generation sequencing.The ecological landscape of microbiome science.Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease.Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data.Gut Dysbiosis and Muscle Aging: Searching for Novel Targets against Sarcopenia.YAMP: a containerized workflow enabling reproducibility in metagenomics research.The microbiome beyond the horizon of ecological and evolutionary theory Quantification of variation and the impact of biomass in targeted 16S rRNA gene sequencing studies Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis Conducting metagenomic studies in microbiology and clinical research Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices Evaluating the Information Content of Shallow Shotgun Metagenomics

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P2860

Library preparation methodology can influence genomic and functional predictions in human microbiome research

http://www.wikidata.org/entity/Q35825456

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2015年论文

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2015年论文

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name

Library preparation methodolog ...... s in human microbiome research

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Library preparation methodolog ...... s in human microbiome research

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Library preparation methodolog ...... s in human microbiome research

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Library preparation methodolog ...... s in human microbiome research

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PNAS.1519288112

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Proceedings of the National Academy of Sciences of the United States of America

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Library preparation methodolog ...... s in human microbiome research

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David T Pride

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Ericka L Anderson

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Jessica Green

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Karen E Nelson

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Marcus B Jones

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Mark Dayrit

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Martin M Fabani

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Niels Klitgord

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Shibu Yooseph

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Victor Seguritan

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P2860

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies

A framework for human microbiome research

Metagenomic analysis of the human distal gut microbiome

Accurate genome relative abundance estimation based on shotgun metagenomic reads

An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation).

Relating the metatranscriptome and metagenome of the human gut.

PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.

Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community.

Evaluating variation in human gut microbiota profiles due to DNA extraction method and inter-subject differences.

Variations in 16S rRNA-based microbiome profiling between pyrosequencing runs and between pyrosequencing facilities.

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14024-14029

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10.1073/PNAS.1519288112

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45

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112

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J. Craig Venter

Sarah K Highlander

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2015-10-28T00:00:00Z

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283324001

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26512100

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4653211

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