Hobbes: optimized gram-based methods for efficient read alignment.
about
Alignment of Short Reads: A Crucial Step for Application of Next-Generation Sequencing Data in Precision MedicineData compression for sequencing dataImproving read mapping using additional prefix gramsShort Read Mapping: An Algorithmic Tour.RazerS 3: faster, fully sensitive read mapping.Fast and accurate read mapping with approximate seeds and multiple backtracking.Accelerating read mapping with FastHASH.A random-permutations-based approach to fast read alignmentRandAL: a randomized approach to aligning DNA sequences to reference genomesBitMapper: an efficient all-mapper based on bit-vector computing.Detecting and comparing non-coding RNAs in the high-throughput erarHAT: fast alignment of noisy long reads with regional hashing.The effects of sampling on the efficiency and accuracy of k-mer indexes: Theoretical and empirical comparisons using the human genome.GateKeeper: A New Hardware Architecture for Accelerating Pre-Alignment in DNA Short Read Mapping.Fast and accurate phylogeny reconstruction using filtered spaced-word matches.Optimal seed solver: optimizing seed selection in read mapping.Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping.HAlign: Fast multiple similar DNA/RNA sequence alignment based on the centre star strategy.Computing Platforms for Big Biological Data Analytics: Perspectives and Challenges.Estimating evolutionary distances between genomic sequences from spaced-word matches.Streaming fragment assignment for real-time analysis of sequencing experiments.HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing.FMtree: A fast locating algorithm of FM-indexes for genomic data.Comparing fixed sampling with minimizer sampling when using k-mer indexes to find maximal exact matches.Fast and efficient short read mapping based on a succinct hash index.GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.
P2860
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P2860
Hobbes: optimized gram-based methods for efficient read alignment.
description
2011 nî lūn-bûn
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2011年の論文
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2011年論文
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2011年論文
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name
Hobbes: optimized gram-based methods for efficient read alignment.
@ast
Hobbes: optimized gram-based methods for efficient read alignment.
@en
type
label
Hobbes: optimized gram-based methods for efficient read alignment.
@ast
Hobbes: optimized gram-based methods for efficient read alignment.
@en
prefLabel
Hobbes: optimized gram-based methods for efficient read alignment.
@ast
Hobbes: optimized gram-based methods for efficient read alignment.
@en
P2093
P2860
P356
P1476
Hobbes: optimized gram-based methods for efficient read alignment.
@en
P2093
Alexander Behm
Athena Ahmadi
Lingjie Weng
Nagesh Honnalli
Xiaohui Xie
P2860
P356
10.1093/NAR/GKR1246
P407
P577
2011-12-22T00:00:00Z