A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis
about
MD Simulations of tRNA and Aminoacyl-tRNA Synthetases: Dynamics, Folding, Binding, and AllosteryStructure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review"Fluctuograms" reveal the intermittent intra-protein communication in subtilisin Carlsberg and correlate mechanical coupling with co-evolutionMolecular Dynamics Simulations and Structural Analysis to Decipher Functional Impact of a Twenty Residue Insert in the Ternary Complex of Mus musculus TdT IsoformThe Unfolding MD Simulations of Cyclophilin: Analyzed by Surface Contact Networks and Their Associated MetricsFlexibility and communication within the structure of the Mycobacterium smegmatis methionyl-tRNA synthetaseStructure of Leishmania major methionyl-tRNA synthetase in complex with intermediate products methionyladenylate and pyrophosphateInterfacial residues of SpcS chaperone affects binding of effector toxin ExoT in Pseudomonas aeruginosa: novel insights from structural and computational studiesPerturbation centrality and turbine: a novel centrality measure obtained using a versatile network dynamics toolALKBH1-Mediated tRNA Demethylation Regulates TranslationNodes having a major influence to break cooperation define a novel centrality measure: game centrality.An automated approach to network features of protein structure ensemblesDifferential modulation of functional dynamics and allosteric interactions in the Hsp90-cochaperone complexes with p23 and Aha1: a computational study.Emerging Computational Methods for the Rational Discovery of Allosteric Drugs.Allosteric regulation of the Hsp90 dynamics and stability by client recruiter cochaperones: protein structure network modelingThe construction of an amino acid network for understanding protein structure and function.Computational modeling of allosteric regulation in the hsp90 chaperones: a statistical ensemble analysis of protein structure networks and allosteric communications.Allosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2D and 3D graphs.Integrating atomistic molecular dynamics simulations, experiments, and network analysis to study protein dynamics: strength in unity.Molecular dynamics simulations and modelling of the residue interaction networks in the BRAF kinase complexes with small molecule inhibitors: probing the allosteric effects of ligand-induced kinase dimerization and paradoxical activation.DNA-binding protects p53 from interactions with cofactors involved in transcription-independent functions.Interaction energy based protein structure networksWordom: a user-friendly program for the analysis of molecular structures, trajectories, and free energy surfaces.An optimal distance cutoff for contact-based Protein Structure Networks using side-chain centers of mass.Allosteric communication in cysteinyl tRNA synthetase: a network of direct and indirect readout.Paths of long-range communication in the E2 enzymes of family 3: a molecular dynamics investigation.ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality.Integrative modelling of TIR domain-containing adaptor molecule inducing interferon-β (TRIF) provides insights into its autoinhibited stateMechanisms of intramolecular communication in a hyperthermophilic acylaminoacyl peptidase: a molecular dynamics investigation.Implications from a network-based topological analysis of ubiquitin unfolding simulations.Elucidation of the conformational free energy landscape in H.pylori LuxS and its implications to catalysisLigand-induced protein responses and mechanical signal propagation described by linear response theoriesAllosteric communication across the native and mutated KIT receptor tyrosine kinase.A mechanistic understanding of allosteric immune escape pathways in the HIV-1 envelope glycoprotein.Two pathways mediate interdomain allosteric regulation in pin1Dynamical networks in tRNA:protein complexes.Communication routes in ARID domains between distal residues in helix 5 and the DNA-binding loops.Dual role of methionyl-tRNA synthetase in the regulation of translation and tumor suppressor activity of aminoacyl-tRNA synthetase-interacting multifunctional protein-3Detection of allosteric signal transmission by information-theoretic analysis of protein dynamicsMechanisms of SecM-mediated stalling in the ribosome
P2860
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P2860
A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis
description
2007 nî lūn-bûn
@nan
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
2007年论文
@zh
2007年论文
@zh-cn
name
A study of communication pathw ...... and structure network analysis
@ast
A study of communication pathw ...... and structure network analysis
@en
type
label
A study of communication pathw ...... and structure network analysis
@ast
A study of communication pathw ...... and structure network analysis
@en
prefLabel
A study of communication pathw ...... and structure network analysis
@ast
A study of communication pathw ...... and structure network analysis
@en
P2860
P356
P1476
A study of communication pathw ...... and structure network analysis
@en
P2093
Amit Ghosh
P2860
P304
15711-15716
P356
10.1073/PNAS.0704459104
P407
P577
2007-09-26T00:00:00Z