HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies - Wikidata - awgldk - TriplyDB

HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies

HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies

http://www.wikidata.org/entity/Q36130898

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The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families Major Improvements to the Heliconius melpomene Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution.The transcriptome of an amphioxus, Asymmetron lucayanum, from the Bahamas: a window into chordate evolution Decelerated genome evolution in modern vertebrates revealed by analysis of multiple lancelet genomes Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8.Genome comparison of Candida orthopsilosis clinical strains reveals the existence of hybrids between two distinct subspecies.Molecular hyperdiversity and evolution in very large populations.Genome-wide survey and expression analysis of the bHLH-PAS genes in the amphioxus Branchiostoma floridae reveal both conserved and diverged expression patterns between cephalochordates and vertebrates The Whole-Genome and Transcriptome of the Manila Clam (Ruditapes philippinarum).Genomic introgression mapping of field-derived multiple-anthelmintic resistance in Teladorsagia circumcincta dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis TCF/Lef regulates the Gsx ParaHox gene in central nervous system development in chordates The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology.Correlated patterns of genetic diversity and differentiation across an avian family.Gene Family Evolution Reflects Adaptation to Soil Environmental Stressors in the Genome of the Collembolan Orchesella cincta.Regulatory elements retained during chordate evolution: coming across tunicates.A draft genome of the brown alga, Cladosiphon okamuranus, S-strain: a platform for future studies of 'mozuku' biology.HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly.Draft genome sequence of Bacillus thuringiensis strain DAR 81934, which exhibits molluscicidal activity.Identification of Hox genes and rearrangements within the single homeobox (Hox) cluster (192.8 kb) of the cyclopoid copepod (Paracyclopina nana).Draft Genome Sequence of an Endophytic Fungus, Gaeumannomyces sp. Strain JS-464, Isolated from a Reed Plant, Phragmites communis.Draft Genome Sequence of Aspergillus persii NIBRFGC000004109, Which Has Antibacterial Activity against Plant-Pathogenic Bacteria.Redundans: an assembly pipeline for highly heterozygous genomes How Single Molecule Real-Time Sequencing and Haplotype Phasing Have Enabled Reference-Grade Diploid Genome Assembly of Wine Grapes.Extensive recent secondary contacts between four European white oak species.Genome Sequence of an Endophytic Fungus, Fusarium solani JS-169, Which Has Antifungal Activity.Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices.Amphioxus SYCP1: a case of retrogene replacement and co-option of regulatory elements adjacent to the ParaHox cluster.Nemertean and phoronid genomes reveal lophotrochozoan evolution and the origin of bilaterian heads Biology and genome of a newly discovered sibling species of Caenorhabditis elegans Oak genome reveals facets of long lifespan Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages

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HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies

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Guangrui Huang

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Shangwu Chen

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Shaochun Yuan

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Ting Yu

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Zelin Chen

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A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome

The diploid genome sequence of Candida albicans

The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

The complete genome of an individual by massively parallel DNA sequencing

The amphioxus genome and the evolution of the chordate karyotype

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Human-mouse alignments with BLASTZ

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

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