Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome. - Wikidata - awgldk - TriplyDB

Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome.

Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome.

http://www.wikidata.org/entity/Q36186371

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Revisiting RNA-directed DNA methylation siRNA-mediated DNA methylation and H3K9 dimethylation in plants.DNA Methylation Signatures of the Plant Chromomethyltransferases DNA topoisomerase 1α promotes transcriptional silencing of transposable elements through DNA methylation and histone lysine 9 dimethylation in Arabidopsis Characterization of human pseudogene-derived non-coding RNAs for functional potential Distinct and concurrent pathways of Pol II- and Pol IV-dependent siRNA biogenesis at a repetitive trans-silencer locus in Arabidopsis thaliana.A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms An Rrp6-like protein positively regulates noncoding RNA levels and DNA methylation in Arabidopsis.The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis.Diverse gene-silencing mechanisms with distinct requirements for RNA polymerase subunits in Zea mays.The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs.The role of the Arabidopsis Exosome in siRNA-independent silencing of heterochromatic loci.ARGONAUTE 6 bridges transposable element mRNA-derived siRNAs to the establishment of DNA methylation.Arabidopsis C-terminal domain phosphatase-like 1 functions in miRNA accumulation and DNA methylation.Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis RNA-directed DNA methylation requires stepwise binding of silencing factors to long non-coding RNA Vernalization treatment induces site-specific DNA hypermethylation at the VERNALIZATION-A1 (VRN-A1) locus in hexaploid winter wheat Stress-induced endogenous siRNAs targeting regulatory intron sequences in Brachypodium.Regulatory link between DNA methylation and active demethylation in Arabidopsis Non-Coding RNAs in Transcriptional Regulation: The review for Current Molecular Biology Reports Control of Chromatin Structure by Long Noncoding RNA.RNA Pol IV and V in gene silencing: Rebel polymerases evolving away from Pol II's rules Evidence for ARGONAUTE4-DNA interactions in RNA-directed DNA methylation in plants.Long-range control of gene expression via RNA-directed DNA methylation A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis.DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV Establishing epigenetic variation during genome reprogramming.Emergence and expansion of TFIIB-like factors in the plant kingdom Long non-coding RNA produced by RNA polymerase V determines boundaries of heterochromatin.RNA polymerase V targets transcriptional silencing components to promoters of protein-coding genes.RNA-directed DNA methylation in plants: Where to start?Analysis of long non-coding RNAs produced by a specialized RNA polymerase in Arabidopsis thaliana.Arabidopsis EDM2 promotes IBM1 distal polyadenylation and regulates genome DNA methylation patterns Roles, and establishment, maintenance and erasing of the epigenetic cytosine methylation marks in plants.Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes.Control of transposable elements in Arabidopsis thaliana.More than meets the eye? Factors that affect target selection by plant miRNAs and heterochromatic siRNAs.Analysis of Argonaute 4-Associated Long Non-Coding RNA in Arabidopsis thaliana Sheds Novel Insights into Gene Regulation through RNA-Directed DNA Methylation.

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P2860

Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome.

http://www.wikidata.org/entity/Q36186371

description

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Spatial and functional relatio ...... in the Arabidopsis epigenome.

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Spatial and functional relatio ...... in the Arabidopsis epigenome.

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Spatial and functional relatio ...... in the Arabidopsis epigenome.

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Spatial and functional relatio ...... in the Arabidopsis epigenome.

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Spatial and functional relatio ...... in the Arabidopsis epigenome.

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Spatial and functional relatio ...... in the Arabidopsis epigenome.

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Spatial and functional relatio ...... in the Arabidopsis epigenome.

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Andrzej T Wierzbicki

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Anoop Mayampurath

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Brian D Gregory

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Craig S Pikaard

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Haixu Tang

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Joseph R Ecker

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M Jordan Rowley

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Ross Cocklin

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Ryan Lister

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P2860

Model-based analysis of ChIP-Seq (MACS)

RNA polymerase V transcription guides ARGONAUTE4 to chromatin

Genetic and functional diversification of small RNA pathways in plants

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis

A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation.

A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis.

Demethylation-induced developmental pleiotropy in Arabidopsis.

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10.1101/GAD.197772.112

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16

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26

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22855789

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3426761

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