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Discovery of Fur binding site clusters in Escherichia coli by information theory models.

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

http://www.wikidata.org/entity/Q36357793

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A reexamination of information theory-based methods for DNA-binding site identification Fur and the novel regulator YqjI control transcription of the ferric reductase gene yqjH in Escherichia coli Structural basis for the specialization of Nur, a nickel-specific Fur homolog, in metal sensing and DNA recognition Fur controls iron homeostasis and oxidative stress defense in the oligotrophic alpha-proteobacterium Caulobacter crescentus Regulation of the Bacillus subtilis yciC gene and insights into the DNA-binding specificity of the zinc-sensing metalloregulator Zur.Characterization of the Fur regulon in Pseudomonas syringae pv. tomato DC3000 The immediate global responses of Aliivibrio salmonicida to iron limitations Landscape of RNA polyadenylation in E. coli.Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes Transcriptional and posttranscriptional regulation of Shigella shuT in response to host-associated iron availability and temperature H-NOX-mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri.Regulation of high-affinity iron acquisition homologues in the tsetse fly symbiont Sodalis glossinidius.COLOMBOS: access port for cross-platform bacterial expression compendia The ubiquitous yybP-ykoY riboswitch is a manganese-responsive regulatory element.Communication between binding sites is required for YqjI regulation of target promoters within the yqjH-yqjI intergenic region.Fur is the master regulator of the extraintestinal pathogenic Escherichia coli response to serum.TonB-dependent transporters: regulation, structure, and function.The influence of repressor DNA binding site architecture on transcriptional control Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding.Transcriptional map of respiratory versatility in the hyperthermophilic crenarchaeon Pyrobaculum aerophilum.Genome-scale co-expression network comparison across Escherichia coli and Salmonella enterica serovar Typhimurium reveals significant conservation at the regulon level of local regulators despite their dissimilar lifestyles.The influence of promoter architectures and regulatory motifs on gene expression in Escherichia coli.A brief review of molecular information theory.Every Site Counts: Submitting Transcription Factor-Binding Site Information through the CollecTF Portal.Predicting the impact of promoter variability on regulatory outputs Discovery of novel tumor suppressor p53 response elements using information theory.EcoCyc: a comprehensive view of Escherichia coli biology.Global identification of genes affecting iron-sulfur cluster biogenesis and iron homeostasis.Nitric Oxide Regulation of H-NOX Signaling Pathways in Bacteria.Epigenetic mechanisms in microbial members of the human microbiota: current knowledge and perspectives.The FurA regulon in Anabaena sp. PCC 7120: in silico prediction and experimental validation of novel target genes.Detailed analysis of Helicobacter pylori Fur-regulated promoters reveals a Fur box core sequence and novel Fur-regulated genes The fur transcription regulator and fur-regulated genes in Clostridium botulinum A ATCC 3502.Impact of Anaerobiosis on Expression of the Iron-Responsive Fur and RyhB Regulons.IscR controls iron-dependent biofilm formation in Escherichia coli by regulating type I fimbria expression.Transcriptional regulation of main metabolic pathways of cyoA, cydB, fnr, and fur gene knockout Escherichia coli in C-limited and N-limited aerobic continuous cultures.Environmental regulation of the long polar fimbriae 2 of enterohemorrhagic Escherichia coli O157:H7 Fe-S cluster biosynthesis controls uptake of aminoglycosides in a ROS-less death pathway.O2 availability impacts iron homeostasis in Escherichia coli.Three Hcp homologs with divergent extended loop regions exhibit different functions in avian pathogenic Escherichia coli.

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P2860

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

http://www.wikidata.org/entity/Q36357793

description

2007 nî lūn-bûn

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2007年の論文

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2007年学术文章

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2007年学术文章

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2007年学术文章

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2007年学术文章

@zh-my

2007年学术文章

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2007年學術文章

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2007年學術文章

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2007年學術文章

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name

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

@ast

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

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type

label

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

@ast

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

@en

prefLabel

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

@ast

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

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Nucleic Acids Research

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Discovery of Fur binding site clusters in Escherichia coli by information theory models

@en

P2093

Bernard Doan

http://www.w3.org/2001/XMLSchema#string

Ilya G Lyakhov

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Karen A Lewis

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Ming Zheng

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Ryan K Shultzaberger

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Zehua Chen

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P2860

A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

Sequence logos: a new way to display consensus sequences

Identification of novel small RNAs using comparative genomics and microarrays

Consensus sequence Zen

Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases.

Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands.

Architecture of a protein central to iron homeostasis: crystal structure and spectroscopic analysis of the ferric uptake regulator

The complete genome sequence of Escherichia coli K-12

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

Effect of RyhB small RNA on global iron use in Escherichia coli

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6762-6777

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scholarly article

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10.1093/NAR/GKM631

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20

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35

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Thomas D Schneider

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2007-10-05T00:00:00Z

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5922576

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17921503

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Escherichia coli

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2189734

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