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Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationshipsA mitogenomic re-evaluation of the bdelloid phylogeny and relationships among the SyndermataPhylogeny and biogeography of dolichoderine ants: effects of data partitioning and relict taxa on historical inferencePleistocene glaciations, demographic expansion and subsequent isolation promoted morphological heterogeneity: A phylogeographic study of the alpine Rosa sericea complex (Rosaceae)The role of East Asian monsoon system in shaping population divergence and dynamics of a constructive desert shrub Reaumuria soongaricaGeological and climatic changes in quaternary shaped the evolutionary history of Calibrachoa heterophylla, an endemic South-Atlantic species of petuniaLong branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct modelLoss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogenySuprafamilial relationships among Rodentia and the phylogenetic effect of removing fast-evolving nucleotides in mitochondrial, exon and intron fragmentsphangorn: phylogenetic analysis in REM for phylogenetic topology reconstruction on nonhomogeneous dataEstimating phylogenetic trees from genome-scale data.Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci.Factors affecting the concordance between orthologous gene trees and species tree in bacteria.Deep phylogeny--how a tree can help characterize early life on Earth.The devil in the details: interactions between the branch-length prior and likelihood model affect node support and branch lengths in the phylogeny of the Psoraceae.Coalescence patterns of endemic Tibetan species of stream salamanders (Hynobiidae: Batrachuperus).Assessment of substitution model adequacy using frequentist and Bayesian methods.Sensitivity of Ribosomal RNA Character Sampling in the Phylogeny of Rhabditida.Phylogenetic analyses: comparing species to infer adaptations and physiological mechanisms.Genome-wide heterogeneity of nucleotide substitution model fit.Habitat segregation and cryptic adaptation of species of Periophthalmus (Gobioidei: Gobiidae).Origin of year-long bean (Phaseolus dumosus Macfady, Fabaceae) from reticulated hybridization events between multiple Phaseolus speciesThe effects of partitioning on phylogenetic inference.Evolutionarily significant units of the critically endangered leaf frog Pithecopus ayeaye (Anura, Phyllomedusidae) are not effectively preserved by the Brazilian protected areas network.Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit.The influence of model averaging on clade posteriors: an example using the triggerfishes (Family Balistidae).Biophysical constraints on the evolution of tissue structure and function.Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae).Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates.Does choice in model selection affect maximum likelihood analysis?Impact of the tree prior on estimating clock rates during epidemic outbreaks.A large-scale molecular phylogeny of flesh flies (Diptera: Sarcophagidae)Patterns of clade support across the major lineages of moss phylogenyMolecular phylogeny reveals the non-monophyly of tribe Yinshanieae (Brassicaceae) and description of a new tribe, HillielleaeStatistical consistency and phylogenetic inference: a brief reviewBarcoding's next top model: an evaluation of nucleotide substitution models for specimen identificationMolecular phylogeny of the Raphidiidae (Raphidioptera)*
P2860
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P2860
description
2006 nî lūn-bûn
@nan
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
2006年论文
@zh
2006年论文
@zh-cn
name
Model use in phylogenetics: nine key questions.
@en
type
label
Model use in phylogenetics: nine key questions.
@en
prefLabel
Model use in phylogenetics: nine key questions.
@en
P1476
Model use in phylogenetics: nine key questions
@en
P2093
Scot A Kelchner
P356
10.1016/J.TREE.2006.10.004
P577
2006-10-17T00:00:00Z