Measuring nanometer distances in nucleic acids using a sequence-independent nitroxide probe. - Wikidata - awgldk - TriplyDB

Measuring nanometer distances in nucleic acids using a sequence-independent nitroxide probe.

Measuring nanometer distances in nucleic acids using a sequence-independent nitroxide probe.

http://www.wikidata.org/entity/Q36724988

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Structure of p53 binding to the BAX response element reveals DNA unwinding and compression to accommodate base-pair insertion Global structure of a three-way junction in a phi29 packaging RNA dimer determined using site-directed spin labeling.Quantitative cw Overhauser effect dynamic nuclear polarization for the analysis of local water dynamics.A Nitroxide-Tagged Platinum(II) Complex Enables the Identification of a DNA G-Quadruplex Binding Mode Characterizing the dynamics of the leader-linker interaction in the glycine riboswitch with site-directed spin labeling Studying RNA using site-directed spin-labeling and continuous-wave electron paramagnetic resonance spectroscopy Conformational distributions at the N-peptide/boxB RNA interface studied using site-directed spin labeling.A nucleotide-independent nitroxide probe reports on site-specific stereomeric environment in DNA Pulse dipolar ESR of doubly labeled mini TAR DNA and its annealing to mini TAR RNA RNA dynamics: perspectives from spin labels.A nucleotide-independent cyclic nitroxide label for monitoring segmental motions in nucleic acids Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.Conformations of Human Telomeric G-Quadruplex Studied Using a Nucleotide-Independent Nitroxide Label Diastereomer characterizations of nitroxide-labeled nucleic acids.Site-directed spin labeling studies on nucleic acid structure and dynamics Site-specific DNA structural and dynamic features revealed by nucleotide-independent nitroxide probes New developments in spin labels for pulsed dipolar EPR.Nucleotide-Independent Copper(II)-Based Distance Measurements in DNA by Pulsed ESR Spectroscopy.CRISPR-Cas9 Mediated DNA Unwinding Detected Using Site-Directed Spin Labeling.A versatile approach for site-directed spin labeling and structural EPR studies of RNAs.Tandem arrays of TEMPO and nitronyl nitroxide radicals with designed arrangements on DNA.An Integrated Spin-Labeling/Computational-Modeling Approach for Mapping Global Structures of Nucleic Acids Complementary-addressed site-directed spin labeling of long natural RNAs A new building block for DNA network formation by self-assembly and polymerase chain reaction.Experimental mapping of DNA duplex shape enabled by global lineshape analyses of a nucleotide-independent nitroxide probe.Structural changes of an abasic site in duplex DNA affect noncovalent binding of the spin label ç.Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling.Nitroxide sensing of a DNA microenvironment: mechanistic insights from EPR spectroscopy and molecular dynamics simulations.High-Frequency Electron Paramagnetic Resonance Spectroscopy of Nitroxide-Functionalized Nanodiamonds in Aqueous Solution.Nucleic Acid-Dependent Conformational Changes in CRISPR-Cas9 Revealed by Site-Directed Spin Labeling.Insights on the Structure, Molecular Weight, and Activity of an Antibacterial Protein-Polymer Hybrid.Spin labelling for integrative structure modelling: a case study of the polypyrimidine-tract binding protein 1 domains in complexes with short RNAs.Chromatographic approaches for the characterization and quality control of therapeutic oligonucleotide impurities.Site-directed spin-labeling of nucleotides and the use of in-cell EPR to determine long-range distances in a biologically relevant environment.Long-range distance measurements on nucleic acids in cells by pulsed EPR spectroscopy.Simulating electron spin resonance spectra of macromolecules labeled with two dipolar-coupled nitroxide spin labels from trajectories.Spectroscopic selection of distance measurements in a protein dimer with mixed nitroxide and Gd3+ spin labels.Site-directed spin labeling of 2'-amino groups in RNA with isoindoline nitroxides that are resistant to reduction.High-resolution measurement of long-range distances in RNA: pulse EPR spectroscopy with TEMPO-labeled nucleotides† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c5sc04631a.

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Measuring nanometer distances in nucleic acids using a sequence-independent nitroxide probe.

http://www.wikidata.org/entity/Q36724988

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Measuring nanometer distances ...... e-independent nitroxide probe.

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Nature Protocols

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Measuring nanometer distances ...... e-independent nitroxide probe.

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Ana K Kusnetzow

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Anna Popova

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Bruno Herreros

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Eric A Price

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Gian Paola G Grant

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Glenna Z Sowa

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Honghang He

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Ian S Haworth

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Peter Z Qin

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Qi Cai

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The Protein Data Bank

An NMR and molecular modelling analysis of d(CTACTGCTTTAG). d(CTAAAGCAGTAG) reveals that the particular behaviour of TpA steps is related to edge-to-edge contacts of their base-pairs in the major groove

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

Estimation of inter-residue distances in spin labeled proteins at physiological temperatures: experimental strategies and practical limitations.

Protein structure determination using long-distance constraints from double-quantum coherence ESR: study of T4 lysozyme.

Recent advances and applications of site-directed spin labeling.

Base-specific spin-labeling of RNA for structure determination.

A PELDOR-based nanometer distance ruler for oligonucleotides.

Determination of the distance between two spin labels attached to a macromolecule.

Identifying conformational changes with site-directed spin labeling.

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2354-2365

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10.1038/NPROT.2007.308

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10

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2

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1021352204

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2430106

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