Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization.
about
Telling plant species apart with DNA: from barcodes to genomesHarnessing the power of RADseq for ecological and evolutionary genomicsHigh levels of interspecific gene flow in an endemic cichlid fish adaptive radiation from an extreme lake environmentProcesses Driving the Adaptive Radiation of a Tropical Tree (Diospyros, Ebenaceae) in New Caledonia, a Biodiversity HotspotUse of RAD sequencing for delimiting speciesThousands of RAD-seq Loci Fully Resolve the Phylogeny of the Highly Disjunct Arctic-Alpine Genus Diapensia (Diapensiaceae)Phylogeny of Morella rubra and Its Relatives (Myricaceae) and Genetic Resources of Chinese Bayberry Using RAD SequencingExploring the utility of cross-laboratory RAD-sequencing datasets for phylogenetic analysisLimitations of climatic data for inferring species boundaries: insights from speckled rattlesnakesApplicability of RAD-tag genotyping for interfamilial comparisons: empirical data from two cetaceans.Species delimitation using genome-wide SNP data.How Should Genes and Taxa be Sampled for Phylogenomic Analyses with Missing Data? An Empirical Study in Iguanian Lizards.RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data.Genome-wide SNPs lead to strong signals of geographic structure and relatedness patterns in the major arbovirus vector, Aedes aegyptiPhylogeny of zebrafish, a "model species," within Danio, a "model genus"PyRAD: assembly of de novo RADseq loci for phylogenetic analyses.Next generation sequencing for characterizing biodiversity: promises and challenges.Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing.Optimization of multiplexed RADseq libraries using low-cost adaptors.Exploring origins, invasion history and genetic diversity of Imperata cylindrica (L.) P. Beauv. (Cogongrass) in the United States using genotyping by sequencing.The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews.Next-generation sampling: Pairing genomics with herbarium specimens provides species-level signal in Solidago (Asteraceae).Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies.Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga).Phylogeographic and population genetic analyses reveal multiple species of Boa and independent origins of insular dwarfism.Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics.Misconceptions on Missing Data in RAD-seq Phylogenetics with a Deep-scale Example from Flowering Plants.Salmonid Chromosome Evolution as Revealed by a Novel Method for Comparing RADseq Linkage Maps.A Genetic Map for the Only Self-Fertilizing VertebrateReference-based RADseq resolves robust relationships among closely related species of lichen-forming fungi using metagenomic DNA.Comparative performance of double-digest RAD sequencing across divergent arachnid lineages.Genome-wide RAD sequencing data provide unprecedented resolution of the phylogeny of temperate bamboos (Poaceae: Bambusoideae).Rapid diversification associated with ecological specialization in Neotropical Adelpha butterflies.RADseq dataset with 90% missing data fully resolves recent radiation of Petalidium (Acanthaceae) in the ultra-arid deserts of Namibia.Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics.Detection of genetically isolated entities within the Mediterranean species of Bemisia tabaci: new insights into the systematics of this worldwide pest.Diversification and asymmetrical gene flow across time and space: lineage sorting and hybridization in polytypic barking frogs.An In Silico Comparison of Protocols for Dated Phylogenomics.Phylogeographic analysis of the East Asian goldenrod (Solidago virgaurea complex, Asteraceae) reveals hidden ecological diversification with recurrent formation of ecotypes.Practical considerations for plant phylogenomics.
P2860
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P2860
Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization.
description
2013 nî lūn-bûn
@nan
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
2013年论文
@zh
2013年论文
@zh-cn
name
Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization.
@ast
Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization.
@en
type
label
Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization.
@ast
Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization.
@en
prefLabel
Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization.
@ast
Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization.
@en
P2093
P2860
P356
P1476
Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization.
@en
P2093
Laurent Duret
Marie Cariou
Sylvain Charlat
P2860
P304
P356
10.1002/ECE3.512
P577
2013-02-27T00:00:00Z