Computing the stability diagram of the Trp-cage miniprotein
about
Intrinsic Localized Modes in ProteinsCavities determine the pressure unfolding of proteinsCircular permutation of the Trp-cage: fold rescue upon addition of a hydrophobic stapleSodium perchlorate effects on the helical stability of a mainly alanine peptide.Fast protein folding kineticsThe behavior of the hydrophobic effect under pressure and protein denaturation.The AGBNP2 Implicit Solvation Model.Protonation/deprotonation effects on the stability of the Trp-cage miniprotein.Enhanced sampling and applications in protein folding in explicit solvent.Folding dynamics and pathways of the trp-cage miniproteins.Temperature and pressure denaturation of chignolin: folding and unfolding simulation by multibaric-multithermal molecular dynamics method.Acceleration of Lateral Equilibration in Mixed Lipid Bilayers Using Replica Exchange with Solute Tempering.Atomic-level structure characterization of an ultrafast folding mini-protein denatured state.Role of solvation in pressure-induced helix stabilizationChallenges in protein folding simulations: Timescale, representation, and analysisKinetic network study of the diversity and temperature dependence of Trp-Cage folding pathways: combining transition path theory with stochastic simulations.Backbone and side-chain contributions in protein denaturation by urea.Reaching the protein folding speed limit with large, sub-microsecond pressure jumps.Role of tryptophan side chain dynamics on the Trp-cage mini-protein folding studied by molecular dynamics simulations.Improved Generalized Born Solvent Model Parameters for Protein Simulations.New Insights into Protein (Un)Folding Dynamics.Smoothing protein energy landscapes by integrating folding models with structure predictionTuning the Attempt Frequency of Protein Folding Dynamics via Transition-State Rigidification: Application to Trp-Cage.Achieving secondary structural resolution in kinetic measurements of protein folding: a case study of the folding mechanism of Trp-cage.Inclusion of many-body effects in the additive CHARMM protein CMAP potential results in enhanced cooperativity of α-helix and β-hairpin formationMicrosecond simulations of the folding/unfolding thermodynamics of the Trp-cage miniprotein.Generating reservoir conformations for replica exchange through the use of the conformational space annealing methodCombining coarse-grained protein models with replica-exchange all-atom molecular dynamics.Dynamic folding pathway models of the Trp-cage proteinInfrared and Fluorescence Assessment of Protein Dynamics: From Folding to Function.Folding of Trp-cage mini protein using temperature and biasing potential replica-exchange molecular dynamics simulationsComputational investigation of cold denaturation in the Trp-cage miniprotein.The role of cross-chain ionic interactions for the stability of collagen model peptides.How kinetics within the unfolded state affects protein folding: an analysis based on markov state models and an ultra-long MD trajectoryCommon structural transitions in explicit-solvent simulations of villin headpiece foldingAssessment of local friction in protein folding dynamics using a helix cross-linker.Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework.Design principles for high-pressure force fields: Aqueous TMAO solutions from ambient to kilobar pressures.Thermodynamics of the Trp-cage miniprotein unfolding in ureaFolding thermodynamics of β-hairpins studied by replica-exchange molecular dynamics simulations.
P2860
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P2860
Computing the stability diagram of the Trp-cage miniprotein
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
2008年论文
@zh
2008年论文
@zh-cn
name
Computing the stability diagram of the Trp-cage miniprotein
@en
type
label
Computing the stability diagram of the Trp-cage miniprotein
@en
prefLabel
Computing the stability diagram of the Trp-cage miniprotein
@en
P2860
P356
P1476
Computing the stability diagram of the Trp-cage miniprotein
@en
P2093
Angel E García
Sascha Hempel
P2860
P304
17754-17759
P356
10.1073/PNAS.0804775105
P407
P577
2008-11-12T00:00:00Z