Recent advances in the study of nucleic acid flexibility by molecular dynamics.
about
The role of methylation in the intrinsic dynamics of B- and Z-DNANon-specific protein-DNA interactions control I-CreI target binding and cleavageUsing sequence-specific chemical and structural properties of DNA to predict transcription factor binding sitesConformational analysis of nucleic acids revisited: Curves+Molecular dynamics study of prolyl oligopeptidase with inhibitor in binding cavity.Mesoscopic model parametrization of hydrogen bonds and stacking interactions of RNA from melting temperatures.Dissociation of minor groove binders from DNA: insights from metadynamics simulations.A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA.Is N-acetyl-D-glucosamine a rigid 4C1 chair?The ABCs of molecular dynamics simulations on B-DNA, circa 2012.A coarse-grained model of DNA with explicit solvation by water and ions.μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNAThe effect of a G:T mispair on the dynamics of DNANAFlex: a web server for the study of nucleic acid flexibility.Molecular dynamics simulations of double-stranded DNA in an explicit solvent model with the zero-dipole summation method.CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structuresSelective inhibition of miR-21 by phage display screened peptide.Simple Elastic Network Models for Exhaustive Analysis of Long Double-Stranded DNA Dynamics with Sequence Geometry DependenceBridging the gap between theory and experiment to derive a detailed understanding of hammerhead ribozyme catalysis.Unravelling the hidden DNA structural/physical code provides novel insights on promoter locationConstructing RNA dynamical ensembles by combining MD and motionally decoupled NMR RDCs: new insights into RNA dynamics and adaptive ligand recognition.A mesoscale model of DNA and its renaturation.Elbow flexibility of the kt38 RNA kink-turn motif investigated by free-energy molecular dynamics simulations.Nuance in the double-helix and its role in protein-DNA recognition.Binding of the bacteriophage P22 N-peptide to the boxB RNA motif studied by molecular dynamics simulations.Molecular dynamics simulations and coupled nucleotide substitution experiments indicate the nature of A{middle dot}A base pairing and a putative structure of the coralyne-induced homo-adenine duplex.Isosteric and nonisosteric base pairs in RNA motifs: molecular dynamics and bioinformatics study of the sarcin-ricin internal loop.Classical electrostatics for biomolecular simulations.Molecular recognition of RNA: challenges for modelling interactions and plasticity.Atomistic-level portrayal of drug-DNA Interplay: a history of courtships and meetings revealed by molecular simulations.Temperature-induced melting of double-stranded DNA in the absence and presence of covalently bonded antitumour drugs: insight from molecular dynamics simulations.Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles.A single nucleotide resolution model for large-scale simulations of double stranded DNA.Evaluation of DNA Force Fields in Implicit Solvation.Coarse-grained modelling of supercoiled RNA.Extensive molecular dynamics simulations showing that canonical G8 and protonated A38H+ forms are most consistent with crystal structures of hairpin ribozyme.Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium.Relative stability of different DNA guanine quadruplex stem topologies derived using large-scale quantum-chemical computations.Base flip in DNA studied by molecular dynamics simulationsof differently-oxidized forms of methyl-CytosineHow accurate are accurate force-fields for B-DNA?
P2860
Q21134614-7BE97972-A339-4AC8-A72F-5982E318887BQ27678463-6404AEC8-0770-4E5C-ADDC-C76319B6CD85Q28476187-AD2FA3EE-72FE-4291-9A74-AE37E0A89BB6Q29619983-238EBB37-AC5D-49D2-8556-03C060284A13Q30383681-B4CAFEFF-8DC4-48FC-A4C7-E727C42AD789Q30457533-5D8F66DC-3C0E-43D2-88D9-0E033483DA08Q30484039-082B6C37-6966-423C-88F4-7B6D55E115C6Q33566434-0BC1F395-86D7-42E2-980E-C904F6220254Q33978044-B4FF5C5B-41D3-4AA9-AD1A-3DAF070DF000Q34323341-BB457093-CF07-4399-8AC4-82A02765C124Q34481643-0D766415-614B-4CEA-B0BD-7E9FCE67311AQ34510040-FF7C3A86-A3D6-46D5-893D-FB22979ECB9DQ34555663-171954EB-4306-4478-9D09-807C05EFBB1CQ34728020-5A27C610-07D6-46B6-8838-A79BEADA9AF5Q35017031-D595EF0B-6932-4FCA-8AA1-0C398149E916Q35075570-6F3EADED-80C3-4E01-81C5-5888878C0F02Q35562046-2A406545-AD6B-4FE6-B47B-FEED1CFB8CA0Q35857012-C094DF22-36F2-4416-9F01-0EC1B34BE16BQ36561838-1FE803B9-6103-49C8-9669-EBAEA9866744Q37122090-3B0D5C02-255C-4496-9686-4DA34E41ED77Q37235314-E6A2DA2D-BED0-4304-ADE7-CD82169F7C74Q37279310-AC517445-5269-4DAB-B878-B58F300B1574Q37373429-2F7EBDAA-CAFE-4831-82E1-44EAED034CFDQ37442208-4FE6D6F8-6557-46C1-B9C6-ADEDE3FE6E78Q37475602-70985FA4-FCF6-43F0-8182-B4F2B008EC4FQ37477496-E8C4A15A-B318-4F0B-81E9-FDE34F25B2C2Q37624617-22764170-D346-4C5A-B6C6-63F7DDADC157Q37626128-DAE73B26-D7BD-4347-8E63-2893BEABFFDAQ37639277-E627A23A-1C70-4019-AEE7-CCD99BC43E5DQ38237566-4A4338EF-DC17-4A70-90D7-FB79F57F6CE0Q38333766-2210CF7B-4393-4BB8-9074-F4E9CB0379E6Q38389887-B51E65BD-EEFA-40FA-9496-DC132720382DQ38795340-945EB46B-C73D-45DF-BE41-5C2B4D028D98Q38848165-59B8C748-FA51-4455-8AEA-03C49EBC4AD5Q40152255-724F9027-9B71-48D0-8690-F344AD732F38Q40623105-C84F63B0-1E16-45CC-B42D-3E08AF387FDEQ41476736-3FFB90C3-CB38-4CF9-9B90-B43951F901FAQ41957783-C5E713FA-FA1F-4C9B-9273-444D06B86C4EQ42086540-82D9E40B-0275-4677-A064-31949D74E61AQ42092575-C68AB337-D930-43B2-B51E-A19B46FCE2C9
P2860
Recent advances in the study of nucleic acid flexibility by molecular dynamics.
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年学术文章
@wuu
2008年学术文章
@zh
2008年学术文章
@zh-cn
2008年学术文章
@zh-hans
2008年学术文章
@zh-my
2008年学术文章
@zh-sg
2008年學術文章
@yue
2008年學術文章
@zh-hant
name
Recent advances in the study of nucleic acid flexibility by molecular dynamics.
@en
Recent advances in the study of nucleic acid flexibility by molecular dynamics.
@nl
type
label
Recent advances in the study of nucleic acid flexibility by molecular dynamics.
@en
Recent advances in the study of nucleic acid flexibility by molecular dynamics.
@nl
prefLabel
Recent advances in the study of nucleic acid flexibility by molecular dynamics.
@en
Recent advances in the study of nucleic acid flexibility by molecular dynamics.
@nl
P1476
Recent advances in the study of nucleic acid flexibility by molecular dynamics.
@en
P2093
Alberto Pérez
Modesto Orozco
P304
P356
10.1016/J.SBI.2008.01.005
P50
P577
2008-03-04T00:00:00Z