Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers
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The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfishGenome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplicationA second generation genetic map of the bumblebee Bombus terrestris (Linnaeus, 1758) reveals slow genome and chromosome evolution in the ApidaeConstruction of a radiation hybrid panel and the first yellowtail (Seriola quinqueradiata) radiation hybrid map using a nanofluidic dynamic arrayA pilot study for channel catfish whole genome sequencing and de novo assembly.Construction of a high-resolution genetic linkage map and comparative genome analysis for the reef-building coral Acropora millepora.Comparative analysis of catfish BAC end sequences with the zebrafish genome.Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies.A consensus linkage map of the grass carp (Ctenopharyngodon idella) based on microsatellites and SNPs.Identification and analysis of muscle-related protein isoforms expressed in the white muscle of the mandarin fish (Siniperca chuatsi).An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags.Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Manila clam Ruditapes philippinarum.Identification and characterisation of functional expressed sequence tags-derived simple sequence repeat (eSSR) markers for genetic linkage mapping of Schistosoma mansoni juvenile resistance and susceptibility loci in Biomphalaria glabrataGenetic linkage mapping and analysis of muscle fiber-related QTLs in common carp (Cyprinus carpio L.).A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus).A high-resolution linkage map for comparative genome analysis and QTL fine mapping in Asian seabass, Lates calcariferUse of comparative genomics to develop EST-SSRs for red drum (Sciaenops ocellatus).An Expressed Sequence Tag (EST)-enriched genetic map of turbot (Scophthalmus maximus): a useful framework for comparative genomics across model and farmed teleosts.Genome-wide SNP discovery from transcriptome of four common carp strains.Construction of high-density genetic linkage maps and mapping of growth-related quantitative trail loci in the Japanese flounder (Paralichthys olivaceus)Construction of a high-density microsatellite genetic linkage map and mapping of sexual and growth-related traits in half-smooth tongue sole (Cynoglossus semilaevis).A microsatellite-based linkage map of salt tolerant tilapia (Oreochromis mossambicus x Oreochromis spp.) and mapping of sex-determining loci.Genomic approaches with natural fish populations.A dense genetic linkage map for common carp and its integration with a BAC-based physical map.Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements.Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex geneGeneration of physical map contig-specific sequences useful for whole genome sequence scaffolding.Whole genome comparative analysis of channel catfish (Ictalurus punctatus) with four model fish species.Construction of high-density genetic linkage maps for orange-spotted grouper Epinephelus coioides using multiplexed shotgun genotypingThe first transcriptome and genetic linkage map for Asian arowana.Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish.Development of the catfish 250K SNP array for genome-wide association studies.A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance.First haploid genetic map based on microsatellite markers in Senegalese sole (Solea senegalensis, Kaup 1858).Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfishGenome-wide identification of SSR and SNP markers from the non-heading Chinese cabbage for comparative genomic analyses.Functional marker detection and analysis on a comprehensive transcriptome of large yellow croaker by next generation sequencingGeneration of the first BAC-based physical map of the common carp genome.Genome survey and high-density genetic map construction provide genomic and genetic resources for the Pacific White Shrimp Litopenaeus vannamei.Second-generation genetic linkage map of catfish and its integration with the BAC-based physical map
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Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 26 January 2009
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Construction of genetic linkag ...... using gene-associated markers
@en
Construction of genetic linkag ...... using gene-associated markers.
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type
label
Construction of genetic linkag ...... using gene-associated markers
@en
Construction of genetic linkag ...... using gene-associated markers.
@nl
prefLabel
Construction of genetic linkag ...... using gene-associated markers
@en
Construction of genetic linkag ...... using gene-associated markers.
@nl
P2093
P2860
P50
P1433
P1476
Construction of genetic linkag ...... using gene-associated markers
@en
P2093
Benjaporn Somridhivej
Chongbo He
Puttharat Baoprasertkul
William Muir
Yanliang Jiang
Yaping Wang
Zhenxia Sha
P2860
P304
P356
10.1534/GENETICS.108.098855
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P50
P577
2009-01-26T00:00:00Z