Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
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A user's guide to the encyclopedia of DNA elements (ENCODE)Current bioinformatic approaches to identify DNase I hypersensitive sites and genomic footprints from DNase-seq dataWeakly positioned nucleosomes enhance the transcriptional competency of chromatinClassification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factorsQuantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome associationDefining functional DNA elements in the human genomeAn integrated encyclopedia of DNA elements in the human genomeEXTREME: an online EM algorithm for motif discoveryThe accessible chromatin landscape of the human genomeHigh-resolution genome-wide in vivo footprinting of diverse transcription factors in human cellsAccurate inference of transcription factor binding from DNA sequence and chromatin accessibility dataENCODE whole-genome data in the UCSC genome browser (2011 update)YeTFaSCo: a database of evaluated yeast transcription factor sequence specificitiesEpigenetic priors for identifying active transcription factor binding sitesDynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanismGenomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shapeChromatin: constructing the big pictureDNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cellsDefining cell types and states with single-cell genomicsEpigenomics and the structure of the living genomeHigh-throughput sequencing for biology and medicineSuper-enhancers: Asset management in immune cell genomesIdentifying novel transcriptional components controlling energy metabolismCrystal Structure of Chiral γPNA with Complementary DNA Strand: Insights into the Stability and Specificity of Recognition and Conformational PreorganizationUniform transitions of the general RNA polymerase II transcription complex.The p23 molecular chaperone and GCN5 acetylase jointly modulate protein-DNA dynamics and open chromatin statusChromatin particle spectrum analysis: a method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing.Genome-wide epigenomic profiling for biomarker discoveryProtein-DNA binding in high-resolutionComprehensive mapping of long-range interactions reveals folding principles of the human genomeLagging-strand replication shapes the mutational landscape of the genomeAn expansive human regulatory lexicon encoded in transcription factor footprintsThe role of epigenetic mechanisms and processes in autoimmune disordersGenome-wide modeling of transcription preinitiation complex disassembly mechanisms using ChIP-chip dataQuantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila developmentEvidence for a common evolutionary rate in metazoan transcriptional networksInterplay between chromatin state, regulator binding, and regulatory motifs in six human cell typesNext-generation genomics: an integrative approachCorrelation Between DNase I Hypersensitive Site Distribution and Gene Expression in HeLa S3 CellsIntegrative analysis of 111 reference human epigenomes
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Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
@pt
bilimsel makale
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scientific article published on 22 March 2009
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
@en
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
@nl
type
label
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
@en
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
@nl
prefLabel
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
@en
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
@nl
P2093
P2860
P356
P1433
P1476
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
@en
P2093
Alex P Reynolds
Jay R Hesselberth
Michael S Kuehn
Peter J Sabo
Robert E Thurman
Shane Neph
Stanley Fields
William S Noble
Xiaoyu Chen
Zhihong Zhang
P2860
P2888
P304
P356
10.1038/NMETH.1313
P577
2009-03-22T00:00:00Z