jpHMM: improving the reliability of recombination prediction in HIV-1. - Wikidata - awgldk - TriplyDB

jpHMM: improving the reliability of recombination prediction in HIV-1.

jpHMM: improving the reliability of recombination prediction in HIV-1.

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BF integrase genes of HIV-1 circulating in São Paulo, Brazil, with a recurrent recombination region Novel HIV-1 recombinants spreading across multiple risk groups in the United Kingdom: the identification and phylogeography of Circulating Recombinant Form (CRF) 50_A1D HIV-1 subtypes B and C unique recombinant forms (URFs) and transmitted drug resistance identified in the Western Cape Province, South Africa Genetic Characterization of a Panel of Diverse HIV-1 Isolates at Seven International Sites The role of viral introductions in sustaining community-based HIV epidemics in rural Uganda: evidence from spatial clustering, phylogenetics, and egocentric transmission models Identification of an HIV-1 BG Intersubtype Recombinant Form (CRF73_BG), Partially Related to CRF14_BG, Which Is Circulating in Portugal and Spain Rare HIV-1 Subtype J Genomes and a New H/U/CRF02_AG Recombinant Genome Suggests an Ancient Origin of HIV-1 in Angola A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis.Characterization of a novel HIV-1 unique recombinant form between CRF07_BC and CRF55_01B in men who have sex with men in Guangzhou, China.RecDraw: a software package for the representation of HIV-1 recombinant structures.Near full-length genome sequence of a novel HIV-1 recombinant form (CRF01_AE/B) detected among men who have sex with men in Jilin Province, China.Detection of viral sequence fragments of HIV-1 subfamilies yet unknown More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMs.Development of a contemporary globally diverse HIV viral panel by the EQAPOL program Identification and genetic characterization of a novel CRF22_01A1 recombinant form of HIV type 1 in Cameroon.Classification of HIV-1 sequences using profile Hidden Markov Models.A model-based information sharing protocol for profile Hidden Markov Models used for HIV-1 recombination detection Transmitted HIV type 1 drug resistance among individuals with recent HIV infection in East and Southern Africa.Unraveling the web of viroinformatics: computational tools and databases in virus research.HIV-1 diversity in an antiretroviral treatment naïve cohort from Bushbuckridge, Mpumalanga Province, South Africa.Recombination pattern reanalysis of some HIV-1 circulating recombination forms suggest the necessity and difficulty of revision.HIV type 1 in a rural coastal town in Kenya shows multiple introductions with many subtypes and much recombination.HIV-infected sex workers with beneficial HLA-variants are potential hubs for selection of HIV-1 recombinants that may affect disease progression The HAND Database: a gateway to understanding the role of HIV in HIV-associated neurocognitive disorders.Characteristics and spread to the native population of HIV-1 non-B subtypes in two European countries with high migration rate Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization Characterization of primary isolates of HIV type 1 CRF28_BF, CRF29_BF, and unique BF recombinants circulating in São Paulo, Brazil Transmitted drug resistance and phylogenetic relationships among acute and early HIV-1-infected individuals in New York City.The Genomic Signature of Population Reconnection Following Isolation: From Theory to HIV.Nucleoside reverse transcriptase inhibitor resistance mutations associated with first-line stavudine-containing antiretroviral therapy: programmatic implications for countries phasing out stavudine Molecular evolution of the HIV-1 Thai epidemic between the time of RV144 immunogen selection to the execution of the vaccine efficacy trial.Significant contribution of subtype G to HIV-1 genetic complexity in Nigeria identified by a newly developed subtyping assay specific for subtype G and CRF02_AG.Analysis of HIV-1 intersubtype recombination breakpoints suggests region with high pairing probability may be a more fundamental factor than sequence similarity affecting HIV-1 recombination Phylodynamic analysis to inform prevention efforts in mixed HIV epidemics.Recent increased identification and transmission of HIV-1 unique recombinant forms in Sweden.HIV-1 genetic diversity in Russia: CRF63_02A1, a new HIV type 1 genetic variant spreading in Siberia.jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus.Genetic characterization of an isolate of HIV type 1 AG recombinant form circulating in Siberia, Russia.HIV-1 sequences in the epidemic suggest an alternative pathway for the generation of the Long Terminal Repeats A clustering phenomenon among HCV-1a strains among patients coinfected with HIV from Buenos Aires, Argentina.

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jpHMM: improving the reliability of recombination prediction in HIV-1.

http://www.wikidata.org/entity/Q37245811

description

article científic

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article scientifique

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articolo scientifico

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artigo científico

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bilimsel makale

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scientific article published on 14 May 2009

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vedecký článok

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vetenskaplig artikel

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videnskabelig artikel

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vědecký článek

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name

jpHMM: improving the reliability of recombination prediction in HIV-1.

@en

jpHMM: improving the reliability of recombination prediction in HIV-1.

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type

label

jpHMM: improving the reliability of recombination prediction in HIV-1.

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jpHMM: improving the reliability of recombination prediction in HIV-1.

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prefLabel

jpHMM: improving the reliability of recombination prediction in HIV-1.

@en

jpHMM: improving the reliability of recombination prediction in HIV-1.

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Nucleic Acids Research

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jpHMM: improving the reliability of recombination prediction in HIV-1.

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Burkhard Morgenstern

http://www.w3.org/2001/XMLSchema#string

Ingo Bulla

http://www.w3.org/2001/XMLSchema#string

Mario Stanke

http://www.w3.org/2001/XMLSchema#string

Ming Zhang

http://www.w3.org/2001/XMLSchema#string

P2860

A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes

Classification of hepatitis C virus and human immunodeficiency virus-1 sequences with the branching index

Profile hidden Markov models

Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination

TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops.

TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments.

An automated genotyping system for analysis of HIV-1 and other microbial sequences.

cBrother: relaxing parental tree assumptions for Bayesian recombination detection.

jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1.

Detection of HIV-1 subtypes, recombinants, and dual infections in east Africa by a multi-region hybridization assay.

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W647-51

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scholarly article

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10.1093/NAR/GKP371

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Web Server issue

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37

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Anne-Kathrin Schultz

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2009-05-14T00:00:00Z

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24428512

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19443440

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2703979

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