Post-acquisition ETD spectral processing for increased peptide identifications. - Wikidata - awgldk - TriplyDB

Post-acquisition ETD spectral processing for increased peptide identifications.

Post-acquisition ETD spectral processing for increased peptide identifications.

http://www.wikidata.org/entity/Q37276972

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Computational phosphoproteomics: from identification to localization Electron transfer dissociation mass spectrometry in proteomics Identification of a general O-linked protein glycosylation system in Acinetobacter baumannii and its role in virulence and biofilm formation Multicentric validation of proteomic biomarkers in urine specific for diabetic nephropathy Increasing peptide identifications and decreasing search times for ETD spectra by pre-processing and calculation of parent precursor charge Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease.In silico proteome-wide amino aCid and elemental composition (PACE) analysis of expression proteomics data provides a fingerprint of dominant metabolic processes.Database search strategies for proteomic data sets generated by electron capture dissociation mass spectrometry.The effect of interfering ions on search algorithm performance for electron-transfer dissociation data.Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets.Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification.Improving software performance for peptide electron transfer dissociation data analysis by implementation of charge state- and sequence-dependent scoring Value of using multiple proteases for large-scale mass spectrometry-based proteomics Sub-part-per-million precursor and product mass accuracy for high-throughput proteomics on an electron transfer dissociation-enabled orbitrap mass spectrometer.A novel approach for untargeted post-translational modification identification using integer linear optimization and tandem mass spectrometry.An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates.Proteomic and phosphoproteomic comparison of human ES and iPS cells.Diversity within the O-linked protein glycosylation systems of acinetobacter species.A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.Protein analysis by shotgun/bottom-up proteomics GlycoPep Detector: a tool for assigning mass spectrometry data of N-linked glycopeptides on the basis of their electron transfer dissociation spectra COMPASS: a suite of pre- and post-search proteomics software tools for OMSSA Characterization and diagnostic value of amino acid side chain neutral losses following electron-transfer dissociation.The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry.Urine proteome analysis reflects atherosclerotic disease in an ApoE-/- mouse model and allows the discovery of new candidate biomarkers in mouse and human atherosclerosis.Current challenges in software solutions for mass spectrometry-based quantitative proteomics.Implementation of Activated Ion Electron Transfer Dissociation on a Quadrupole-Orbitrap-Linear Ion Trap Hybrid Mass Spectrometer Diversity in the protein N-glycosylation pathways within the Campylobacter genus Comprehensive mass spectrometric mapping of the hydroxylated amino acid residues of the α1(V) collagen chain.A proteomics search algorithm specifically designed for high-resolution tandem mass spectra.Systematic evaluation of alternating CID and ETD fragmentation for phosphorylated peptides In silico instrumental response correction improves precision of label-free proteomics and accuracy of proteomics-based predictive models.Phosphoproteomic analysis: an emerging role in deciphering cellular signaling in human embryonic stem cells and their differentiated derivatives.Front-End Electron Transfer Dissociation Coupled to a 21 Tesla FT-ICR Mass Spectrometer for Intact Protein Sequence Analysis.Phosphoproteomics with Activated Ion Electron Transfer Dissociation.The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD)Full-Featured Search Algorithm for Negative Electron-Transfer Dissociation.Challenges ahead for mass spectrometry and proteomics applications in epigenetics.ETD fragmentation features improve algorithm.

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P2860

Post-acquisition ETD spectral processing for increased peptide identifications.

http://www.wikidata.org/entity/Q37276972

description

article científic

@ca

article scientifique

@fr

articolo scientifico

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artigo científico

@pt

bilimsel makale

@tr

scientific article published on 14 March 2009

@en

vedecký článok

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vetenskaplig artikel

@sv

videnskabelig artikel

@da

vědecký článek

@cs

name

Post-acquisition ETD spectral processing for increased peptide identifications.

@en

Post-acquisition ETD spectral processing for increased peptide identifications.

@nl

type

label

Post-acquisition ETD spectral processing for increased peptide identifications.

@en

Post-acquisition ETD spectral processing for increased peptide identifications.

@nl

prefLabel

Post-acquisition ETD spectral processing for increased peptide identifications.

@en

Post-acquisition ETD spectral processing for increased peptide identifications.

@nl

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J.JASMS.2009.03.006

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Journal of the American Society for Mass Spectrometry

P1476

Post-acquisition ETD spectral processing for increased peptide identifications.

@en

P2093

Craig D Wenger

http://www.w3.org/2001/XMLSchema#string

David M Good

http://www.w3.org/2001/XMLSchema#string

Dina L Bai

http://www.w3.org/2001/XMLSchema#string

Donald F Hunt

http://www.w3.org/2001/XMLSchema#string

Graeme C McAlister

http://www.w3.org/2001/XMLSchema#string

Joshua J Coon

http://www.w3.org/2001/XMLSchema#string

P2860

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry.

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.

Performance characteristics of electron transfer dissociation mass spectrometry

Open mass spectrometry search algorithm

Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer

Electron Capture Dissociation of Multiply Charged Protein Cations. A Nonergodic Process

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI fourier transform ion cyclotron resonance mass spectrometry.

Protein identification using sequential ion/ion reactions and tandem mass spectrometry.

A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer.

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j.jasms.2009.03.006

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1435-1440

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scholarly article

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10.1016/J.JASMS.2009.03.006

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8

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1004081122

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19362853

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2716440

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