Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction.
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Systems biology of the structural proteomeTowards an Enhanced Understanding of Plant-Microbiome Interactions to Improve Phytoremediation: Engineering the MetaorganismSystems Biology Approaches to Understand Natural Products BiosynthesisSynthetic Ecology of Microbes: Mathematical Models and ApplicationsIntegration of metabolomics data into metabolic networksComputing the functional proteome: recent progress and future prospects for genome-scale modelsAnalysis of genetic variation and potential applications in genome-scale metabolic modelingData-driven integration of genome-scale regulatory and metabolic network modelsUsing Genome-scale Models to Predict Biological CapabilitiesSystematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolismVariability of metabolite levels is linked to differential metabolic pathways in Arabidopsis's responses to abiotic stressesControlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose StarvationSimulating Serial-Target Antibacterial Drug Synergies Using Flux Balance AnalysisLean-proteome strains - next step in metabolic engineeringDevelopments in the tools and methodologies of synthetic biologyMulti-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coliQuantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments.Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways.A Method to Constrain Genome-Scale Models with 13C Labeling Data.A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data.Multi-omic data integration enables discovery of hidden biological regularities.Principles of proteome allocation are revealed using proteomic data and genome-scale models.Maximal sum of metabolic exchange fluxes outperforms biomass yield as a predictor of growth rate of microorganisms.Digital and analog gene circuits for biotechnology.A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.Selection of complementary foods based on optimal nutritional values.Synthetic and systems biology for microbial production of commodity chemicals.Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale.Improving collaboration by standardization efforts in systems biology.Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal mediumQuantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteriaEfficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria.Genome-scale metabolic network validation of Shewanella oneidensis using transposon insertion frequency analysisPredicting internal cell fluxes at sub-optimal growthMetabolic Adaptation Processes That Converge to Optimal Biomass Flux DistributionsSBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks.Constrained Allocation Flux Balance AnalysisTransition of an Anaerobic Escherichia coli Culture to Aerobiosis: Balancing mRNA and Protein Levels in a Demand-Directed Dynamic Flux Balance Analysis.solveME: fast and reliable solution of nonlinear ME models
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Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction.
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on October 2013
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Genome-scale models of metabol ...... e growth phenotype prediction.
@en
Genome-scale models of metabol ...... e growth phenotype prediction.
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type
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Genome-scale models of metabol ...... e growth phenotype prediction.
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Genome-scale models of metabol ...... e growth phenotype prediction.
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Genome-scale models of metabol ...... e growth phenotype prediction.
@en
Genome-scale models of metabol ...... e growth phenotype prediction.
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P2093
P2860
P356
P1476
Genome-scale models of metabol ...... e growth phenotype prediction.
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P2093
Bernhard Ø Palsson
Daniel R Hyduke
Edward J O'Brien
P2860
P356
10.1038/MSB.2013.52
P577
2013-10-01T00:00:00Z