Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism. - Wikidata - awgldk - TriplyDB

Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism.

Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism.

http://www.wikidata.org/entity/Q37328003

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Whole cell biosynthesis of a functional oligosaccharide, 2'-fucosyllactose, using engineered Escherichia coli Rational improvement of the engineered isobutanol-producing Bacillus subtilis by elementary mode analysis Identification of aberrant pathways and network activities from high-throughput data Succinate production in Escherichia coli Elucidating and reprogramming Escherichia coli metabolisms for obligate anaerobic n-butanol and isobutanol production Structural control of metabolic flux Enumeration of smallest intervention strategies in genome-scale metabolic networks A peptide-based method for 13C Metabolic Flux Analysis in microbial communities Metabolic network analysis and experimental study of lipid production in Rhodosporidium toruloides grown on single and mixed substrates Identifying target processes for microbial electrosynthesis by elementary mode analysis Cyanobacterial biofuels: new insights and strain design strategies revealed by computational modeling Redesigning Escherichia coli metabolism for anaerobic production of isobutanol Metabolic engineering of Escherichia coli for efficient conversion of glycerol to ethanol Metabolic network modeling of microbial communities.Stoichiometry based steady-state hepatic flux analysis: computational and experimental aspects.Parallel in vivo DNA assembly by recombination: experimental demonstration and theoretical approaches Combining Targeted Metabolomic Data with a Model of Glucose Metabolism: Toward Progress in Chondrocyte Mechanotransduction.Flux Design: In silico design of cell factories based on correlation of pathway fluxes to desired properties.Complete enumeration of elementary flux modes through scalable demand-based subnetwork definition.Validation of a constraint-based model of Pichia pastoris metabolism under data scarcity.Analysis of complex metabolic behavior through pathway decomposition.Comparison between elementary flux modes analysis and 13C-metabolic fluxes measured in bacterial and plant cells.Predicting the physiological role of circadian metabolic regulation in the green alga Chlamydomonas reinhardtii.Large-scale bi-level strain design approaches and mixed-integer programming solution techniques.Molecular-level tradeoffs and metabolic adaptation to simultaneous stressors Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods Random sampling of elementary flux modes in large-scale metabolic networks.Metabolic variability in micro-populations.Synthetic Biology: A Bridge between Artificial and Natural Cells Comparison and improvement of algorithms for computing minimal cut sets.Design of optimally constructed metabolic networks of minimal functionality.A depth-first search algorithm to compute elementary flux modes by linear programming.An algorithm for the reduction of genome-scale metabolic network models to meaningful core models.Stoichiometric Representation of Gene-Protein-Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.Metabolomics analysis: Finding out metabolic building blocks.Advanced stoichiometric analysis of metabolic networks of mammalian systems.Bridging the gap between fluxomics and industrial biotechnology.Mathematical models of cell factories: moving towards the core of industrial biotechnology.Elementary flux modes in a nutshell: properties, calculation and applications.

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P2860

Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism.

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Elementary mode analysis: a us ...... cterizing cellular metabolism.

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Applied Microbiology and Biotechnology

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Aaron Wlaschin

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Cong T Trinh

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Friedrich Srienc

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P2860

Structural and functional analysis of cellular networks with CellNetAnalyzer

MetaCyc: a multiorganism database of metabolic pathways and enzymes

KEGG for linking genomes to life and the environment

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

Global reconstruction of the human metabolic network based on genomic and bibliomic data

Extreme pathway lengths and reaction participation in genome-scale metabolic networks

Computation of elementary modes: a unifying framework and the new binary approach

YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.

A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks

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