R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. - Wikidata - awgldk - TriplyDB

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

http://www.wikidata.org/entity/Q37364208

about

affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling A new model calling procedure for Illumina BeadArray data.TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays Quantifying uncertainty in genotype calls KRLMM: an adaptive genotype calling method for common and low frequency variants Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips.Endometriosis is associated with rare copy number variants.M(3): an improved SNP calling algorithm for Illumina BeadArray data A framework for oligonucleotide microarray preprocessing.Identification and validation of copy number variants using SNP genotyping arrays from a large clinical cohort SNP array analysis reveals novel genomic abnormalities including copy neutral loss of heterozygosity in anaplastic oligodendrogliomas.Performance assessment of copy number microarray platforms using a spike-in experiment.Excess of rare, inherited truncating mutations in autism.M(3)-S: a genotype calling method incorporating information from samples with known genotypes.Transcriptional Impact of Rare and Private Copy Number Variants in Hypoplastic Left Heart Syndrome Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA.Comparative genomic and genetic analysis of glioblastoma-derived brain tumor-initiating cells and their parent tumors.Low-level processing of Illumina Infinium DNA Methylation BeadArrays The 5p12 breast cancer susceptibility locus affects MRPS30 expression in estrogen-receptor positive tumors.A review of software for microarray genotyping.argyle: An R Package for Analysis of Illumina Genotyping Arrays.illuminaio: An open source IDAT parsing tool for Illumina microarrays Linking genomics and population genetics with R.A user guide to the Brassica 60K Illumina Infinium™ SNP genotyping array.Using the R Package crlmm for Genotyping and Copy Number Estimation.Single nucleotide polymorphism genotyping using BeadChip microarrays.Pathway analysis of transcriptomic data shows immunometabolic effects of vitamin D.Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array.

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R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

http://www.wikidata.org/entity/Q37364208

description

article científic

@ca

article scientifique

@fr

articolo scientifico

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artigo científico

@pt

bilimsel makale

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scientific article published on 06 August 2009

@en

vedecký článok

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vetenskaplig artikel

@sv

videnskabelig artikel

@da

vědecký článek

@cs

name

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

@en

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

@nl

type

label

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

@en

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

@nl

prefLabel

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

@en

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

@nl

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R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips

@en

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Kurt N Hetrick

http://www.w3.org/2001/XMLSchema#string

Rafael A Irizarry

http://www.w3.org/2001/XMLSchema#string

Simon Tavaré

http://www.w3.org/2001/XMLSchema#string

P2860

Bioconductor: open software development for computational biology and bioinformatics

A second generation human haplotype map of over 3.1 million SNPs

lumi: a pipeline for processing Illumina microarray

Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays.

Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data.

beadarray: R classes and methods for Illumina bead-based data.

High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays.

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios.

Microarray technology and applications in the arena of genome-wide association.

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.

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2621-2623

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scholarly article

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10.1093/BIOINFORMATICS/BTP470

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19

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25

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Matthew E Ritchie

Benilton Carvalho

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2009-08-06T00:00:00Z

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26723266

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19661241

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2752620

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