Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation. - Wikidata - awgldk - TriplyDB

Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.

Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.

http://www.wikidata.org/entity/Q37394905

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Spatial distribution of an uranium-respiring betaproteobacterium at the Rifle, CO field research site The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments Environmental Microbial Community Proteomics: Status, Challenges and Perspectives Proteomic tools to decipher microbial community structure and functioning Strategies for metagenomic-guided whole-community proteomics of complex microbial environments Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth.Evaluation of a genome-scale in silico metabolic model for Geobacter metallireducens by using proteomic data from a field biostimulation experiment.Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments.Isolation and physiology of bacteria from contaminated subsurface sediments.An empirical strategy for characterizing bacterial proteomes across species in the absence of genomic sequences.An iterative workflow for mining the human intestinal metaproteome.Dissecting the functional role of key residues in triheme cytochrome PpcA: a path to rational design of G. sulfurreducens strains with enhanced electron transfer capabilities.Microbial functional gene diversity with a shift of subsurface redox conditions during In Situ uranium reduction.Key players and team play: anaerobic microbial communities in hydrocarbon-contaminated aquifers.Survival of the fittest: overcoming oxidative stress at the extremes of Acid, heat and metal.Microbiology and proteomics, getting the best of both worlds!Enhanced uranium immobilization and reduction by Geobacter sulfurreducens biofilms Profiling in situ microbial community structure with an amplification microarray MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site.Evidence of Geobacter-associated phage in a uranium-contaminated aquifer.Monitoring the metabolic status of geobacter species in contaminated groundwater by quantifying key metabolic proteins with Geobacter-specific antibodies Escherichia coli response to uranyl exposure at low pH and associated protein regulations.Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points.Extracellular reduction of uranium via Geobacter conductive pili as a protective cellular mechanism Identification of Bacteria Synthesizing Ribosomal RNA in Response to Uranium Addition During Biostimulation at the Rifle, CO Integrated Field Research Site.Aquifer environment selects for microbial species cohorts in sediment and groundwater Draft genome sequence for Microbacterium laevaniformans strain OR221, a bacterium tolerant to metals, nitrate, and low pH.Application of meta-transcriptomics and -proteomics to analysis of in situ physiological state.Sulfate reduction in groundwater: characterization and applications for remediation Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26 Draft Genome Sequence for Caulobacter sp. Strain OR37, a Bacterium Tolerant to Heavy Metals.Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI)Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature.The current state of microbial proteomics: where we are and where we want to go.

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Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.

http://www.wikidata.org/entity/Q37394905

description

article científic

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article scientifique

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articolo scientifico

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artigo científico

@pt

bilimsel makale

@tr

scientific article published on 28 August 2009

@en

vedecký článok

@sk

vetenskaplig artikel

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videnskabelig artikel

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vědecký článek

@cs

name

Proteogenomic monitoring of Ge ...... ulated uranium bioremediation.

@en

Proteogenomic monitoring of Ge ...... ulated uranium bioremediation.

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type

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Proteogenomic monitoring of Ge ...... ulated uranium bioremediation.

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Proteogenomic monitoring of Ge ...... ulated uranium bioremediation.

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prefLabel

Proteogenomic monitoring of Ge ...... ulated uranium bioremediation.

@en

Proteogenomic monitoring of Ge ...... ulated uranium bioremediation.

@nl

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Applied and Environmental Microbiology

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Proteogenomic monitoring of Ge ...... ulated uranium bioremediation.

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A Lucie N'guessan

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Brian C Thomas

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Carrie D Nicora

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Hila Elifantz

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Jillian F Banfield

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Manesh B Shah

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Mary S Lipton

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Michael J Wilkins

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Nathan C Verberkmoes

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Paul Abraham

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P2860

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer

Visualization of comparative genomic analyses by BLAST score ratio

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

PRISM: a data management system for high-throughput proteomics.

Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate

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6591-6599

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scholarly article

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10.1128/AEM.01064-09

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20

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75

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Derek R. Lovley

Kenneth H. Williams

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2009-08-28T00:00:00Z

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19717633

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2765142

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