Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
about
Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimationDNA is structured as a linear "jigsaw puzzle" in the genomes of Arabidopsis, rice, and budding yeast.SoyTEdb: a comprehensive database of transposable elements in the soybean genomeCharacterization, Genomic Organization, Abundance, and Chromosomal Distribution of Ty1-copia Retrotransposons in Erianthus arundinaceusComparative genomic analysis reveals multiple long terminal repeats, lineage-specific amplification, and frequent interelement recombination for Cassandra retrotransposon in pear (Pyrus bretschneideri Rehd.).Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis.Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly.Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array.Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution.A brief history of the status of transposable elements: from junk DNA to major players in evolution.Distribution of 45S rDNA sites in chromosomes of plants: structural and evolutionary implications.The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination.Population genomics of transposable elements in Drosophila melanogaster.TARE1, a mutated Copia-like LTR retrotransposon followed by recent massive amplification in tomato.Organization and evolution of transposable elements along the bread wheat chromosome 3BThree groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome.Genetic mapping of centromeres in the nine Citrus clementina chromosomes using half-tetrad analysis and recombination patterns in unreduced and haploid gametesThe impact and origin of copy number variations in the Oryza speciesFine-scale population recombination rates, hotspots, and correlates of recombination in the Medicago truncatula genome.Genome-wide characterization of non-reference transposons in crops suggests non-random insertion.The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences.Genome-wide Annotation and Comparative Analysis of Long Terminal Repeat Retrotransposons between Pear Species of P. bretschneideri and P. Communis.The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the Paleohexaploid Brassica rapa.Gene Evolutionary Trajectories and GC Patterns Driven by Recombination in Zea mays.Nested insertions and accumulation of indels are negatively correlated with abundance of mutator-like transposable elements in maize and rice.Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in TranslationExploring giant plant genomes with next-generation sequencing technology.Co-evolution of plant LTR-retrotransposons and their host genomes.Dynamic genetic features of chromosomes revealed by comparison of soybean genetic and sequence-based physical maps.The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression.Genome Biology and the Evolution of Cell-Size Diversity.Repetitive sequences and epigenetic modification: inseparable partners play important roles in the evolution of plant sex chromosomes.Recessive male sterility in cabbage (Brassica oleracea var. capitata) caused by loss of function of BoCYP704B1 due to the insertion of a LTR-retrotransposon.Gene expression: sizing it all up.Low levels of LTR retrotransposon deletion by ectopic recombination in the gigantic genomes of salamanders.Genome-wide characterization of non-reference transposable element insertion polymorphisms reveals genetic diversity in tropical and temperate maize.Holokinetic drive: centromere drive in chromosomes without centromeres.LTRtype, an Efficient Tool to Characterize Structurally Complex LTR Retrotransposons and Nested Insertions on Genomes.Rapid and Recent Evolution of LTR Retrotransposons Drives Rice Genome Evolution During the Speciation of AA-Genome Oryza Species.
P2860
Q30661750-8A07E59E-E3EA-4A7E-8B59-AA5754A9C4CEQ33357928-27511C8F-9C9D-421A-9CCA-B4627344E014Q33531930-165ABE7B-D3F7-4D86-A767-C45A51CE4B9EQ33770228-9F988D60-6EBA-4F1A-97C5-8F44E8352D04Q33836727-8460B7D7-7D60-4385-AD1A-D9B85A73878FQ33840217-A6A071D7-7242-461D-9CC7-DC45AB6116A7Q34151417-B641F141-89B4-4162-8A19-91906A935E98Q34282628-3BD89BF7-0FB1-440A-A0C3-F182AD5AFB29Q34332386-02EC4020-148D-45AE-AE5F-810E96EA1F7EQ34386811-774F4C05-FB13-44EE-9B7C-CF40600304F5Q34488552-34619283-C39A-45C8-BD65-6899B23AFBA8Q34515035-B20D9875-7B04-4B26-A1B5-EAA180FA6BCDQ34676841-05D3F47E-AEA3-4D3F-B55C-DB4E8A2EA91BQ34823735-440712B5-622B-4AFC-B9B7-AF44C2E2AF17Q34827768-3BF10CF1-12E1-46E6-B321-807DBDE6FAFAQ34908786-6A3AEE7D-E732-41A7-9A87-A1D26F22AC25Q35151907-B0CABF6A-E648-4021-9C4F-DBB411591E26Q35201196-3A381198-1BBA-4BE0-9674-784A90D4992AQ35973139-DE25BDA2-FC3C-4FC6-BCB5-CCFA028C21FBQ36054073-8906A4F1-1895-4802-8AEB-5F348F1BB802Q36093355-21277C3E-E838-4D46-9F98-0494999669DBQ36297399-D2BD9F7D-2DAE-4C2A-AE4E-DD3C18E2C364Q36343859-D1B26378-B209-4F92-B706-285DF77536B2Q36810538-E2AB8BA9-8D72-4348-8B17-AD6E45E7B216Q37273284-7D7B66E1-061A-48B1-91E7-7EEDB1278AA4Q37520974-4CE71B5C-FCB5-4C2A-9A95-1FDACF801FA2Q37565732-C6448B10-DBBF-47ED-B66A-251DDBBE9446Q37944178-13665D81-C391-4E63-996B-B6536047A851Q38116455-A33673FD-6C0F-452A-8E6F-65C0772FB3A2Q38454429-893308BA-8D0E-460E-96BF-E513E2B84438Q38475785-D59A0C1C-13D0-4BAE-8D0D-8A60C743CECAQ38562840-051197A6-FCDA-4DB3-8813-4F3D61D47AF0Q38751794-E8B8F886-4DA6-4341-A81B-0B2003540CC2Q38839033-2FC23C90-E753-452D-B688-18BA1F980AFBQ40739708-81988954-43A9-44BF-8CF2-5953BB029344Q41548399-C75D12EB-B83E-476D-B8B0-374BA2202B02Q41591232-A6A3CE58-DB2C-4F2E-8B10-E8BEF58A65E3Q42003856-13807045-F168-49E0-B769-6DFEDD45FC1AQ42182379-B8D3C03F-E2F0-4859-936B-F9B77C15FDE0Q42198685-F0D3995C-3CC5-4BC8-8938-835F0119641E
P2860
Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on 29 September 2009
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
@da
vědecký článek
@cs
name
Do genetic recombination and g ...... minal repeat retrotransposons?
@en
Do genetic recombination and g ...... minal repeat retrotransposons?
@nl
type
label
Do genetic recombination and g ...... minal repeat retrotransposons?
@en
Do genetic recombination and g ...... minal repeat retrotransposons?
@nl
prefLabel
Do genetic recombination and g ...... minal repeat retrotransposons?
@en
Do genetic recombination and g ...... minal repeat retrotransposons?
@nl
P2093
P2860
P356
P1433
P1476
Do genetic recombination and g ...... minal repeat retrotransposons?
@en
P2093
Brandon S Gaut
Carene Rizzon
Jeffrey L Bennetzen
Jianchang Du
Jianxin Ma
Scott A Jackson
Zhixi Tian
P2860
P304
P356
10.1101/GR.083899.108
P50
P577
2009-09-29T00:00:00Z