KSHV 2.0: a comprehensive annotation of the Kaposi's sarcoma-associated herpesvirus genome using next-generation sequencing reveals novel genomic and functional features.
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Next-Generation Sequencing in the Understanding of Kaposi's Sarcoma-Associated Herpesvirus (KSHV) BiologyCo-infections and Pathogenesis of KSHV-Associated MalignanciesModulation of DNA damage and repair pathways by human tumour virusesLong non-coding RNA and epigenetic gene regulation of KSHVCurrent and potential treatments for ubiquitous but neglected herpesvirus infectionsModulation of the Translational Landscape During Herpesvirus InfectionViral activation of MK2-hsp27-p115RhoGEF-RhoA signaling axis causes cytoskeletal rearrangements, p-body disruption and ARE-mRNA stabilizationHigh-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling.The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis.Global transcript structure resolution of high gene density genomes through multi-platform data integrationKaposi's sarcoma-associated herpesvirus polyadenylated nuclear RNA: a structural scaffold for nuclear, cytoplasmic and viral proteins.Ribosome profiling reveals the what, when, where and how of protein synthesisKaposi's sarcoma-associated herpesvirus K3 and K5 ubiquitin E3 ligases have stage-specific immune evasion roles during lytic replicationViral miRNA targeting of bicistronic and polycistronic transcriptsViral profiling identifies multiple subtypes of Kaposi's sarcoma.Functional analysis of Kaposi's sarcoma-associated herpesvirus vFLIP expression reveals a new mode of IRES-mediated translation.MicroRNA-mediated transformation by the Kaposi's sarcoma-associated herpesvirus Kaposin locus.PAN's Labyrinth: Molecular biology of Kaposi's sarcoma-associated herpesvirus (KSHV) PAN RNA, a multifunctional long noncoding RNA.Complex expression of the UL136 gene of human cytomegalovirus results in multiple protein isoforms with unique roles in replication.KSHV LANA--the master regulator of KSHV latency.Identification of the physiological gene targets of the essential lytic replicative Kaposi's sarcoma-associated herpesvirus ORF57 proteinKSHV ORF57, a protein of many facesInfluence of ND10 components on epigenetic determinants of early KSHV latency establishment.Chromatinization of the KSHV Genome During the KSHV Life Cycle.HITS-CLIP analysis uncovers a link between the Kaposi's sarcoma-associated herpesvirus ORF57 protein and host pre-mRNA metabolismNext-Generation Sequencing Analysis Reveals Differential Expression Profiles of MiRNA-mRNA Target Pairs in KSHV-Infected Cells.Deciphering poxvirus gene expression by RNA sequencing and ribosome profiling.ORF45-Mediated Prolonged c-Fos Accumulation Accelerates Viral Transcription during the Late Stage of Lytic Replication of Kaposi's Sarcoma-Associated Herpesvirus.Decoding viral infection by ribosome profiling.Transcriptome-Wide Cleavage Site Mapping on Cellular mRNAs Reveals Features Underlying Sequence-Specific Cleavage by the Viral Ribonuclease SOX.Fine-Tuning of the Kaposi's Sarcoma-Associated Herpesvirus Life Cycle in Neighboring Cells through the RTA-JAG1-Notch Pathway.The KSHV K1 Protein Modulates AMPK Function to Enhance Cell Survival.Genome-wide analysis of G-quadruplexes in herpesvirus genomes.Prediction of Poly(A) Sites by Poly(A) Read Mapping.Infection-Induced Retrotransposon-Derived Noncoding RNAs Enhance Herpesviral Gene Expression via the NF-κB PathwayAlternative RNA splicing of KSHV ORF57 produces two different RNA isoformsFunctional Dissection of an Alternatively Spliced Herpesvirus Gene by Splice Site MutagenesisIlluminating Parasite Protein Production by Ribosome ProfilingPA-seq for Global Identification of RNA Polyadenylation Sites of Kaposi's Sarcoma-Associated Herpesvirus Transcripts.Nowhere to hide: unconventional translation yields cryptic peptides for immune surveillance
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KSHV 2.0: a comprehensive annotation of the Kaposi's sarcoma-associated herpesvirus genome using next-generation sequencing reveals novel genomic and functional features.
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article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 16 January 2014
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
KSHV 2.0: a comprehensive anno ...... nomic and functional features.
@en
KSHV 2.0: a comprehensive anno ...... nomic and functional features.
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type
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KSHV 2.0: a comprehensive anno ...... nomic and functional features.
@en
KSHV 2.0: a comprehensive anno ...... nomic and functional features.
@nl
prefLabel
KSHV 2.0: a comprehensive anno ...... nomic and functional features.
@en
KSHV 2.0: a comprehensive anno ...... nomic and functional features.
@nl
P2093
P2860
P1433
P1476
KSHV 2.0: a comprehensive anno ...... nomic and functional features.
@en
P2093
Alexandre Mercier
Alexis S Madrid
Ben Weisburd
Carolina Arias
Meghan Holdorf
Priya Bellare
P2860
P304
P356
10.1371/JOURNAL.PPAT.1003847
P577
2014-01-16T00:00:00Z