DNA dynamically directs its own transcription initiation. - Wikidata - awgldk - TriplyDB

DNA dynamically directs its own transcription initiation.

DNA dynamically directs its own transcription initiation.

http://www.wikidata.org/entity/Q37519218

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A novel method for prokaryotic promoter prediction based on DNA stability Observation of coherent delocalized phonon-like modes in DNA under physiological conditions.Mechanics of the IL2RA gene activation revealed by modeling and atomic force microscopy The human genomic melting map.Toward a detailed description of the thermally induced dynamics of the core promoter.DNA Breathing Dynamics in the Presence of a Terahertz Field.A statistical thermodynamic model for investigating the stability of DNA sequences from oligonucleotides to genomes.DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation Computing DNA duplex instability profiles efficiently with a two-state model: trends of promoters and binding sites.Mammalian stem cells reprogramming in response to terahertz radiation An ANN-GA model based promoter prediction in Arabidopsis thaliana using tilling microarray data DNA-Destabilizing Agents as an Alternative Approach for Targeting DNA: Mechanisms of Action and Cellular Consequences Hysteresis in pressure-driven DNA denaturation.Binding of nucleoid-associated protein fis to DNA is regulated by DNA breathing dynamics.Specificity and heterogeneity of terahertz radiation effect on gene expression in mouse mesenchymal stem cells.A composite method based on formal grammar and DNA structural features in detecting human polymerase II promoter region.Torsion-mediated interaction between adjacent genes Mesoscopic model and free energy landscape for protein-DNA binding sites: analysis of cyanobacterial promoters.Can we model DNA at the mesoscale?Generic eukaryotic core promoter prediction using structural features of DNA.Profiling the thermodynamic softness of adenoviral promoters.Classifying transcription factor targets and discovering relevant biological features.Machine learning for regulatory analysis and transcription factor target prediction in yeast A stitch in time: efficient computation of genomic DNA melting bubbles.Cooperativity and interaction energy threshold effects in recognition of the -10 promoter element by bacterial RNA polymerase Nonlinearity in DNA and its relation to specific functions A nonlinear dynamic model of DNA with a sequence-dependent stacking term.Single-molecule FRET and linear dichroism studies of DNA breathing and helicase binding at replication fork junctions.Evaluating the role of coherent delocalized phonon-like modes in DNA cyclization.Unravelling the Role of the F55 Regulator in the Transition from Lysogeny to UV Induction of Sulfolobus Spindle-Shaped Virus 1.Salerno's model of DNA re-analysed: could breather solitons have biological significance?ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.Denaturation patterns in heterogeneous DNA.Breathing dynamics in heteropolymer DNA.The Physics of Life and Quantum Complex Matter: A Case of Cross-Fertilization.Helix untwisting and bubble formation in circular DNA.Thermal and mechanical properties of a DNA model with solvation barrier.Locked nucleic acids and intercalating nucleic acids in the design of easily denaturing nucleic acids: thermal stability studies.Dependence on temperature and guanine-cytosine content of bubble length distributions in DNA.Bubble merging in breathing DNA as a vicious walker problem in opposite potentials.

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P2860

DNA dynamically directs its own transcription initiation.

http://www.wikidata.org/entity/Q37519218

description

article científic

@ca

article scientifique

@fr

articolo scientifico

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artigo científico

@pt

bilimsel makale

@tr

scientific article published on 05 March 2004

@en

vedecký článok

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vetenskaplig artikel

@sv

videnskabelig artikel

@da

vědecký článek

@cs

name

DNA dynamically directs its own transcription initiation.

@en

DNA dynamically directs its own transcription initiation.

@nl

type

label

DNA dynamically directs its own transcription initiation.

@en

DNA dynamically directs its own transcription initiation.

@nl

prefLabel

DNA dynamically directs its own transcription initiation.

@en

DNA dynamically directs its own transcription initiation.

@nl

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Nucleic Acids Research

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DNA dynamically directs its own transcription initiation.

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Anny Usheva

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Chu H Choi

http://www.w3.org/2001/XMLSchema#string

George Kalosakas

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Makoto Hiromura

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P2860

Sequence of general transcription factor TFIIB and relationships to other initiation factors

Predicting DNA duplex stability from the base sequence

Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

Crystal structure of a yeast TBP/TATA-box complex

The biology of eukaryotic promoter prediction--a review.

Localization of denaturation bubbles in random DNA sequences.

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein.

The role of structure, energy landscape, dynamics, and allostery in the enzymatic function of myoglobin.

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1584-1590

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scholarly article

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10.1093/NAR/GKH335

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4

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Kim Ø. Rasmussen

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2004-03-05T00:00:00Z

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7708762

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