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Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline

Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline

http://www.wikidata.org/entity/Q37579830

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Novel bioinformatic developments for exome sequencing Parallel computing in genomic research: advances and applications Applications of the MapReduce programming framework to clinical big data analysis: current landscape and future trends The somatic genomic landscape of chromophobe renal cell carcinoma Targeted sequencing in chromosome 17q linkage region identifies familial glioma candidates in the Gliogene Consortium Ten Simple Rules for Digital Data Storage Allelic Mutations of KITLG, Encoding KIT Ligand, Cause Asymmetric and Unilateral Hearing Loss and Waardenburg Syndrome Type 2 Autosomal-Dominant Multiple Pterygium Syndrome Is Caused by Mutations in MYH3.An open access pilot freely sharing cancer genomic data from participants in Texas.Whole Exome Sequencing in Atrial Fibrillation.Methods of integrating data to uncover genotype-phenotype interactions.Focused Analysis of Exome Sequencing Data for Rare Germline Mutations in Familial and Sporadic Lung Cancer Homozygous and hemizygous CNV detection from exome sequencing data in a Mendelian disease cohort.Extremely low-coverage whole genome sequencing in South Asians captures population genomics information.BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU.Whole genome sequencing of SIV-infected macaques identifies candidate loci that may contribute to host control of virus replication Mutually exclusive recurrent somatic mutations in MAP2K1 and BRAF support a central role for ERK activation in LCH pathogenesis.Monoallelic and Biallelic Variants in EMC1 Identified in Individuals with Global Developmental Delay, Hypotonia, Scoliosis, and Cerebellar Atrophy MIPEP recessive variants cause a syndrome of left ventricular non-compaction, hypotonia, and infantile death.Prospective study of sickle cell trait and venous thromboembolism incidence Global transcriptional disturbances underlie Cornelia de Lange syndrome and related phenotypes.Molecular findings among patients referred for clinical whole-exome sequencing.Churchill: an ultra-fast, deterministic, highly scalable and balanced parallelization strategy for the discovery of human genetic variation in clinical and population-scale genomics.Population genomic analysis of 962 whole genome sequences of humans reveals natural selection in non-coding regions.DVL1 frameshift mutations clustering in the penultimate exon cause autosomal-dominant Robinow syndrome.The road from next-generation sequencing to personalized medicine.Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes.ExScalibur: A High-Performance Cloud-Enabled Suite for Whole Exome Germline and Somatic Mutation Identification.Analysis of loss-of-function variants and 20 risk factor phenotypes in 8,554 individuals identifies loci influencing chronic disease Scalable and cost-effective NGS genotyping in the cloud.Secondary findings and carrier test frequencies in a large multiethnic sample.COPA mutations impair ER-Golgi transport and cause hereditary autoimmune-mediated lung disease and arthritis Cpipe: a shared variant detection pipeline designed for diagnostic settings A case study for cloud based high throughput analysis of NGS data using the globus genomics system.Genomic cloud computing: legal and ethical points to consider systemPipeR: NGS workflow and report generation environment A privacy-preserving solution for compressed storage and selective retrieval of genomic data Next-Generation Sequencing and In Vitro Expression Study of ADAMTS13 Single Nucleotide Variants in Deep Vein Thrombosis.Prospective study of circulating factor XI and incident venous thromboembolism: The Longitudinal Investigation of Thromboembolism Etiology (LITE).Hutterite-type cataract maps to chromosome 6p21.32-p21.31, cosegregates with a homozygous mutation in LEMD2, and is associated with sudden cardiac death

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Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline

http://www.wikidata.org/entity/Q37579830

description

article científic

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article scientifique

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artigo científico

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bilimsel makale

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scientific article published on 29 January 2014

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vedecký článok

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vetenskaplig artikel

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videnskabelig artikel

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vědecký článek

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name

Launching genomics into the cl ...... ion sequence analysis pipeline

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Launching genomics into the cl ...... on sequence analysis pipeline.

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Launching genomics into the cl ...... ion sequence analysis pipeline

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Launching genomics into the cl ...... on sequence analysis pipeline.

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prefLabel

Launching genomics into the cl ...... ion sequence analysis pipeline

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Launching genomics into the cl ...... on sequence analysis pipeline.

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1471-2105-15-30

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BMC Bioinformatics

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Launching genomics into the cl ...... ion sequence analysis pipeline

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Adam English

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Andreas Sundquist

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Andrew Carroll

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Christian Buhay

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Fuli Yu

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Geoff Duyk

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Jeffrey G Reid

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Mahmoud Dahdouli

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Matthew Bainbridge

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Narayanan Veeraraghavan

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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme

Chipster: user-friendly analysis software for microarray and other high-throughput data

The complete genome of an individual by massively parallel DNA sequencing

Fast and accurate short read alignment with Burrows-Wheeler transform

Integrated genomic analyses of ovarian carcinoma

Sequencing technologies - the next generation

The Sequence Alignment/Map format and SAMtools

Galaxy: a web-based genome analysis tool for experimentalists

Whole-genome sequence-based analysis of high-density lipoprotein cholesterol

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1471-2105-15-30

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scholarly article

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10.1186/1471-2105-15-30

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15

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Eric Boerwinkle

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259983955

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1013018798

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24475911

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3922167

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