Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model
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Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic DataPhylodynamic analysis of HIV sub-epidemics in Mochudi, BotswanaHow well can the exponential-growth coalescent approximate constant-rate birth-death population dynamics?Bayesian inference of sampled ancestor trees for epidemiology and fossil calibrationSampling through time and phylodynamic inference with coalescent and birth-death modelsBEAST 2: a software platform for Bayesian evolutionary analysisChanges in diversification patterns and signatures of selection during the evolution of murinae-associated hantavirusesUsing an epidemiological model for phylogenetic inference reveals density dependence in HIV transmissionDarwin and Fisher meet at biotech: on the potential of computational molecular evolution in industry.Epidemiologic data and pathogen genome sequences: a powerful synergy for public health.Insights into the early epidemic spread of ebola in sierra leone provided by viral sequence data.Eight challenges in phylodynamic inference.Phylogenetic studies of transmission dynamics in generalized HIV epidemics: an essential tool where the burden is greatest?Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models.The contrasting phylodynamics of human influenza B viruses.Inference of epidemiological dynamics based on simulated phylogenies using birth-death and coalescent models.Long-Range HIV Genotyping Using Viral RNA and Proviral DNA for Analysis of HIV Drug Resistance and HIV Clustering.Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set.Phylodynamic Inference with Kernel ABC and Its Application to HIV Epidemiology.Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study.The effects of sampling strategy on the quality of reconstruction of viral population dynamics using Bayesian skyline family coalescent methods: A simulation studyGenomic analysis of emerging pathogens: methods, application and future trends.Molecular Approaches to Understanding Transmission and Source Attribution in Nontyphoidal Salmonella and Their Application in Africa.Impacts and shortcomings of genetic clustering methods for infectious disease outbreaks.Epidemiological and genetic analysis of hand-foot-mouth disease by enterovirus A71 in Taizhou, P. R. China, between 2010 and 2013.Characterization of VP1 gene of coxsackievirus A16 prevalent among hand foot mouth disease suffered children in Taizhou, P. R. China, between 2010 and 2013.Quantifying Transmission Heterogeneity Using Both Pathogen Phylogenies and Incidence Time Series.Identifying spatio-temporal dynamics of Ebola in Sierra Leone using virus genomes.Mathematical Models for the Epidemiology and Evolution of Mycobacterium tuberculosis.Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals.Genomic Epidemiology of Tuberculosis.Two-phase importance sampling for inference about transmission trees.Inferring epidemiologic dynamics from viral evolution: 2014-2015 Eurasian/North American highly pathogenic avian influenza viruses exceed transmission threshold, R0 = 1, in wild birds and poultry in North America.Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics.
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Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model
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article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 26 February 2014
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Simultaneous reconstruction of ...... with the birth-death SIR model
@en
Simultaneous reconstruction of ...... ith the birth-death SIR model.
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type
label
Simultaneous reconstruction of ...... with the birth-death SIR model
@en
Simultaneous reconstruction of ...... ith the birth-death SIR model.
@nl
prefLabel
Simultaneous reconstruction of ...... with the birth-death SIR model
@en
Simultaneous reconstruction of ...... ith the birth-death SIR model.
@nl
P2860
P50
P356
P1476
Simultaneous reconstruction of ...... with the birth-death SIR model
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P2093
Timothy G Vaughan
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P304
P356
10.1098/RSIF.2013.1106
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2014-02-26T00:00:00Z