Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes.
about
Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long readsViral quasispecies assembly via maximal clique enumerationDifferences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder VirusEvolution of multi-drug resistant HCV clones from pre-existing resistant-associated variants during direct-acting antiviral therapy determined by third-generation sequencing.ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clusteringThird generation sequencing technologies applied to diagnostic microbiology: benefits and challenges in applications and data analysis.A bioinformatics pipeline for the analyses of viral escape dynamics and host immune responses during an infectionFull-length haplotype reconstruction to infer the structure of heterogeneous virus populations.Deconvoluting the composition of low-frequency hepatitis C viral quasispecies: comparison of genotypes and NS3 resistance-associated variants between HCV/HIV coinfected hemophiliacs and HCV monoinfected patients in Japan.ViQuaS: an improved reconstruction pipeline for viral quasispecies spectra generated by next-generation sequencing.Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform.Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals.Investigating intra-host and intra-herd sequence diversity of foot-and-mouth disease virus.Quasispecies Analyses of the HIV-1 Near-full-length Genome With Illumina MiSeq.Towards Better Precision Medicine: PacBio Single-Molecule Long Reads Resolve the Interpretation of HIV Drug Resistant Mutation Profiles at Explicit Quasispecies (Haplotype) Level.Genomic variation in macrophage-cultured European porcine reproductive and respiratory syndrome virus Olot/91 revealed using ultra-deep next generation sequencing.Beyond the whole genome consensus: unravelling of PRRSV phylogenomics using next generation sequencing technologies.A penalized regression approach to haplotype reconstruction of viral populations arising in early HIV/SIV infection.Multiple Sources of Genetic Diversity of Influenza A Viruses during the Hajj.Characterization of Hepatitis C Virus (HCV) Envelope Diversification from Acute to Chronic Infection within a Sexually Transmitted HCV Cluster by Using Single-Molecule, Real-Time Sequencing.Time-Sampled Population Sequencing Reveals the Interplay of Selection and Genetic Drift in Experimental Evolution of Potato Virus Y.Differentiation of acute from chronic hepatitis C virus infection by nonstructural 5B deep sequencing: a population-level tool for incidence estimation.Separation and assembly of deep sequencing data into discrete sub-population genomes.Reliable reconstruction of HIV-1 whole genome haplotypes reveals clonal interference and genetic hitchhiking among immune escape variants.Molecular evolution of HIV-1 integrase during the 20 years prior to the first approval of integrase inhibitors.Viral quasispecies reconstruction via tensor factorization with successive read removal.
P2860
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P2860
Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes.
description
article científic
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article scientifique
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articol științific
@ro
articolo scientifico
@it
artigo científico
@gl
artigo científico
@pt
artigo científico
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artikel ilmiah
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artikull shkencor
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artículo científico
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name
Benchmarking of viral haplotyp ...... urrently available programmes.
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type
label
Benchmarking of viral haplotyp ...... urrently available programmes.
@en
prefLabel
Benchmarking of viral haplotyp ...... urrently available programmes.
@en
P2860
P356
P1476
Benchmarking of viral haplotyp ...... urrently available programmes.
@en
P2093
William T Sloan
P2860
P304
P356
10.1093/BIB/BBS081
P577
2012-12-19T00:00:00Z