pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry.
about
Method for rapid protein identification in a large databasePaired single residue-transposed Lys-N and Lys-C digestions for label-free identification of N-terminal and C-terminal MS/MS peptide product ions: ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry and tandem mass spectAn Efficient Dynamic Programming Algorithm for Phosphorylation Site Assignment of Large-Scale Mass Spectrometry Data.From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics.Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate.Bioinformatics in China: a personal perspectiveTransferred subgroup false discovery rate for rare post-translational modifications detected by mass spectrometry.Speeding up tandem mass spectrometry-based database searching by longest common prefix.Acetylome analysis reveals diverse functions of lysine acetylation in Mycobacterium tuberculosis.PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data.Development of gel-filter method for high enrichment of low-molecular weight proteins from serum.Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs.Experimental Validation of Bacillus anthracis A16R ProteogenomicsMonitoring Cellular Phosphorylation Signaling Pathways into Chromatin and Down to the Gene Level.Quantitative Profiling of the Activity of Protein Lysine Methyltransferase SMYD2 Using SILAC-Based ProteomicspGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD- and CID-MS/MS and MS3.Large-scale global identification of protein lysine methylation in vivo.A strategy for precise and large scale identification of core fucosylated glycoproteins.Various conotoxin diversifications revealed by a venomic study of Conus flavidusDifferent Proteome Profiles between Male and Female Populus cathayana Exposed to UV-B Radiation.Comparative analysis of Cu (I)-catalyzed alkyne-azide cycloaddition (CuAAC) and strain-promoted alkyne-azide cycloaddition (SPAAC) in O-GlcNAc proteomics.Sequential fragment ion filtering and endoglycosidase-assisted identification of intact glycopeptides.A paired ions scoring algorithm based on Morpheus for simultaneous identification and quantification of proteome samples prepared by isobaric peptide termini labeling strategies.Accurate and Efficient Resolution of Overlapping Isotopic Envelopes in Protein Tandem Mass Spectra.Controlling nonspecific trypsin cleavages in LC-MS/MS-based shotgun proteomics using optimized experimental conditions.pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identificationUvrD facilitates DNA repair by pulling RNA polymerase backwards.Crux: rapid open source protein tandem mass spectrometry analysis.Evaluating protein interactions through cross-linking mass spectrometry.Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics.An efficient parallelization of phosphorylated peptide and protein identification.O-GlcNAcylation of SIRT1 enhances its deacetylase activity and promotes cytoprotection under stress.Anatomy and evolution of database search engines-a central component of mass spectrometry based proteomic workflows.Comparison and optimization of strategies for a more profound profiling of the sialylated N-glycoproteomics in human plasma using metal oxide enrichment.NSI and NSMT: usages of MS/MS fragment ion intensity for sensitive differential proteome detection and accurate protein fold change calculation in relative label-free proteome quantification.freeQuant: A Mass Spectrometry Label-Free Quantification Software Tool for Complex Proteome Analysis.
P2860
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P2860
pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry.
description
2005 nî lūn-bûn
@nan
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
2005年论文
@zh
2005年论文
@zh-cn
name
pFind: a novel database-search ...... via tandem mass spectrometry.
@en
type
label
pFind: a novel database-search ...... via tandem mass spectrometry.
@en
prefLabel
pFind: a novel database-search ...... via tandem mass spectrometry.
@en
P2093
P356
P1433
P1476
pFind: a novel database-search ...... via tandem mass spectrometry.
@en
P2093
Charles X Ling
Ruixiang Sun
Yonggang Wei
P2860
P304
P356
10.1093/BIOINFORMATICS/BTI439
P407
P50
P577
2005-04-07T00:00:00Z