Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. - Wikidata - awgldk - TriplyDB

Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate.

Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate.

http://www.wikidata.org/entity/Q38522713

about

Zhangfei is a potent and specific inhibitor of the host cell factor-binding transcription factor Luman The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists Transforming function of the LSM1 oncogene in human breast cancers with the 8p11-12 amplicon Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists Leaky ribosomal scanning in mammalian genomes: significance of histone H4 alternative translation in vivo B.E.A.R. GeneInfo: a tool for identifying gene-related biomedical publications through user modifiable queries Changes in the transcriptional profile of transporters in the intestine along the anterior-posterior and crypt-villus axes Recent additions and improvements to the Onto-Tools.Dynamic covariation between gene expression and proteome characteristics Application of biclustering of gene expression data and gene set enrichment analysis methods to identify potentially disease causing nanomaterials Glucocorticoid-dependent hippocampal transcriptome in male rats: pathway-specific alterations with aging RUNX3 has an oncogenic role in head and neck cancer Adaptive gene regulation in the Striatum of RGS9-deficient mice Modulation of gene expression by 3-iodothyronamine: genetic evidence for a lipolytic pattern Genome-wide transcriptome profiling of region-specific vulnerability to oxidative stress in the hippocampus Exploring the evolutionary history of the differentially expressed genes between human populations: action of recent positive selection GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes Bioinformatics resources for cancer research with an emphasis on gene function and structure prediction tools.Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome A microarray analysis of the effects of moderate hypothermia and rewarming on gene expression by human hepatocytes (HepG2).A genome-wide approach to identify genetic variants that contribute to etoposide-induced cytotoxicity.Transcriptome architecture across tissues in the pig Influence of the interaction between nodal fibroblast and breast cancer cells on gene expression.Discovering time-lagged rules from microarray data using gene profile classifiers Identification of significant features in DNA microarray data.GOblet: a platform for Gene Ontology annotation of anonymous sequence data.Ontological analysis of gene expression data: current tools, limitations, and open problems.A gene coexpression network for bovine skeletal muscle inferred from microarray data.Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways.GeneBins: a database for classifying gene expression data, with application to plant genome arrays.Domain-enhanced analysis of microarray data using GO annotations.PathExpress: a web-based tool to identify relevant pathways in gene expression data.Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data.Microarray data mining using landmark gene-guided clustering.Bioinformatic tools for inferring functional information from plant microarray data II: Analysis beyond single gene.Genome-wide analysis of the endothelial transcriptome under short-term chronic hypoxia.Identification of dynamic proteome changes upon ligand activation of Trk-receptors using two-dimensional fluorescence difference gel electrophoresis and mass spectrometry.Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary.Three-color cDNA microarrays with prehybridization quality control yield gene expression data comparable to that of commercial platforms.

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Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate.

http://www.wikidata.org/entity/Q38522713

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Nucleic Acids Research

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Abhik Shah

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Michael A Tainsky

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Pratik Bhavsar

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Purvesh Khatri

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Stephen A Krawetz

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P2860

A Gene Map of the Human Genome

Gene expression profiling predicts clinical outcome of breast cancer

RefSeq and LocusLink: NCBI gene-centered resources

Pieces of the puzzle: expressed sequence tags and the catalog of human genes.

Global functional profiling of gene expression.

Up-regulation of production of TGF-beta and IL-4 and down-regulation of IL-6 by apoptotic human bronchial epithelial cells.

Mechanism of action of interleukin-2 (IL-2)-Bax, an apoptosis-inducing chimaeric protein targeted against cells expressing the IL-2 receptor.

POWER_SAGE: comparing statistical tests for SAGE experiments.

Profiling Gene Expression Using Onto-Express

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10.1093/NAR/GKG624

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