Evaluation and comparison of computational tools for RNA-seq isoform quantification. - Wikidata - awgldk - TriplyDB

Evaluation and comparison of computational tools for RNA-seq isoform quantification.

Evaluation and comparison of computational tools for RNA-seq isoform quantification.

http://www.wikidata.org/entity/Q38636601

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DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.Genome-wide characterization of differential transcript usage in Arabidopsis thaliana.SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles.Intragenic DNA methylation of PITX1 and the adjacent long non-coding RNA C5orf66-AS1 are prognostic biomarkers in patients with head and neck squamous cell carcinomas.Computational identification and validation of alternative splicing in ZSF1 rat RNA-seq data, a preclinical model for type 2 diabetic nephropathy.Long Non-coding RNAs in Endothelial Biology.Impact of miRNA-mRNA Profiling and Their Correlation on Medulloblastoma Tumorigenesis Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines DoGFinder: a software for the discovery and quantification of readthrough transcripts from RNA-seq

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P2860

Evaluation and comparison of computational tools for RNA-seq isoform quantification.

http://www.wikidata.org/entity/Q38636601

description

2017 nî lūn-bûn

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2017年の論文

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2017年論文

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2017年論文

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2017年論文

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2017年論文

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2017年論文

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2017年论文

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2017年论文

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2017年论文

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name

Evaluation and comparison of computational tools for RNA-seq isoform quantification.

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type

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Evaluation and comparison of computational tools for RNA-seq isoform quantification.

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prefLabel

Evaluation and comparison of computational tools for RNA-seq isoform quantification.

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Evaluation and comparison of computational tools for RNA-seq isoform quantification.

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Baohong Zhang

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Chi Zhang

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Lih-Ling Lin

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Shanrong Zhao

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P2860

GENCODE: the reference human genome annotation for The ENCODE Project

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Alternative isoform regulation in human tissue transcriptomes

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

HTSeq--a Python framework to work with high-throughput sequencing data

STAR: ultrafast universal RNA-seq aligner

Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells

iReckon: simultaneous isoform discovery and abundance estimation from RNA-seq data

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data.

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