Integrating atom-based and residue-based scoring functions for protein-protein docking
about
Large scale characterization of the LC13 TCR and HLA-B8 structural landscape in reaction to 172 altered peptide ligands: a molecular dynamics simulation studySurfing the Protein-Protein Interaction Surface Using Docking Methods: Application to the Design of PPI InhibitorsDockRank: Ranking docked conformations using partner-specific sequence homology-based protein interface predictionProtein-protein structure prediction by scoring molecular dynamics trajectories of putative poses.Evaluating template-based and template-free protein-protein complex structure prediction.Determining Complex Structures using Docking Method with Single Particle Scattering DataScoring docking conformations using predicted protein interfaces.Exploring angular distance in protein-protein docking algorithms.Structural neighboring property for identifying protein-protein binding sites.Molecular modeling of the binding modes of the iron-sulfur protein to the Jac1 co-chaperone from Saccharomyces cerevisiae by all-atom and coarse-grained approachesEvaluation of the coarse-grained OPEP force field for protein-protein docking.CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys.Ranking protein-protein docking results using steered molecular dynamics and potential of mean force calculationsPerformance of ZDOCK in CAPRI rounds 20-26.Multiscale modeling of macromolecular biosystems.Integrative computational modeling of protein interactions.IFACEwat: the interfacial water-implemented re-ranking algorithm to improve the discrimination of near native structures for protein rigid docking.Computational and Experimental Studies of ADP-Ribosylation.NPPD: A Protein-Protein Docking Scoring Function Based on Dyadic Differences in Networks of Hydrophobic and Hydrophilic Amino Acid Residues.Analyzing machupo virus-receptor binding by molecular dynamics simulationsPrediction of protein-protein binding free energies.A knowledge-based orientation potential for transcription factor-DNA docking.Improving ranking of models for protein complexes with side chain modeling and atomic potentials.Score_set: a CAPRI benchmark for scoring protein complexes.Binding affinity prediction of nanobody-protein complexes by scoring of molecular dynamics trajectories.Performance of ZDOCK and IRAD in CAPRI rounds 28-34.Native fold and docking pose discrimination by the same residue-based scoring function.InterEvScore: a novel coarse-grained interface scoring function using a multi-body statistical potential coupled to evolution.Integrating cross-linking experiments with ab initio protein-protein docking.Determination of an effective scoring function for RNA-RNA interactions with a physics-based double-iterative method.
P2860
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P2860
Integrating atom-based and residue-based scoring functions for protein-protein docking
description
2011 nî lūn-bûn
@nan
2011年の論文
@ja
2011年学术文章
@wuu
2011年学术文章
@zh-cn
2011年学术文章
@zh-hans
2011年学术文章
@zh-my
2011年学术文章
@zh-sg
2011年學術文章
@yue
2011年學術文章
@zh
2011年學術文章
@zh-hant
name
Integrating atom-based and residue-based scoring functions for protein-protein docking
@en
type
label
Integrating atom-based and residue-based scoring functions for protein-protein docking
@en
prefLabel
Integrating atom-based and residue-based scoring functions for protein-protein docking
@en
P2860
P356
P1433
P1476
Integrating atom-based and residue-based scoring functions for protein-protein docking
@en
P2093
Howook Hwang
Zhiping Weng
P2860
P304
P356
10.1002/PRO.687
P50
P577
2011-08-08T00:00:00Z