about
The role of methylation in the intrinsic dynamics of B- and Z-DNARole of histone tails in structural stability of the nucleosomeSimilarities and differences in interaction of K+ and Na+ with condensed ordered DNA. A molecular dynamics computer simulation studyThe contribution of phosphate-phosphate repulsions to the free energy of DNA bending.A coarse graining approach to determine nucleic acid structures from small angle neutron scattering profiles in solution.Molecular dynamics simulations of sarcin-ricin rRNA motif.Physicochemical Properties of Ion Pairs of Biological MacromoleculesClose encounters with DNAThe 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contractionUnusual Salt and pH Induced Changes in Polyethylenimine SolutionsRefinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformersCheckMyMetal: a macromolecular metal-binding validation toolMolecular dynamics of a kappaB DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulationStructure, Stiffness and Substates of the Dickerson-Drew Dodecamer.A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA.Analyzing ion distributions around DNA.Structure and properties of DNA in apolar solvents.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) stepsThe ABCs of molecular dynamics simulations on B-DNA, circa 2012.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.Cadherin mechanics and complexation: the importance of calcium binding.Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozymeIon distributions around left- and right-handed DNA and RNA duplexes: a comparative study.Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics.Molecular dynamics of a DNA Holliday junction: the inverted repeat sequence d(CCGGTACCGG)₄.The genomic HDV ribozyme utilizes a previously unnoticed U-turn motif to accomplish fast site-specific catalysisSimulations Meet Experiment to Reveal New Insights into DNA Intrinsic Mechanics.Ranking of Molecular Biomarker Interaction with Targeted DNA Nucleobases via Full Atomistic Molecular DynamicsSlowing down DNA translocation through a nanopore in lithium chloride.Molecular dynamics simulations of RNA: an in silico single molecule approach.Mg2+ in the major groove modulates B-DNA structure and dynamicsConformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics.The contribution of transient counterion imbalances to DNA bending fluctuationsParmbsc1: a refined force field for DNA simulations.Determining promoter location based on DNA structure first-principles calculationsPredicting thymine dimerization yields from molecular dynamics simulations.Towards a molecular dynamics consensus view of B-DNA flexibilityQuantitative analysis of monovalent counterion binding to random-sequence, double-stranded DNA using the replacement ion method.Molecular dynamics simulations and their application to four-stranded DNA.DNA A-tracts are not curved in solutions containing high concentrations of monovalent cations.
P2860
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P2860
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年学术文章
@wuu
2004年学术文章
@zh-cn
2004年学术文章
@zh-hans
2004年学术文章
@zh-my
2004年学术文章
@zh-sg
2004年學術文章
@yue
2004年學術文章
@zh
2004年學術文章
@zh-hant
name
DNA and its counterions: a molecular dynamics study.
@en
DNA and its counterions: a molecular dynamics study.
@nl
type
label
DNA and its counterions: a molecular dynamics study.
@en
DNA and its counterions: a molecular dynamics study.
@nl
prefLabel
DNA and its counterions: a molecular dynamics study.
@en
DNA and its counterions: a molecular dynamics study.
@nl
P2860
P356
P1476
DNA and its counterions: a molecular dynamics study.
@en
P2093
Krystyna Zakrzewska
Péter Várnai
P2860
P304
P356
10.1093/NAR/GKH765
P577
2004-08-10T00:00:00Z