PDB_REDO: automated re-refinement of X-ray structure models in the PDB. - Wikidata - awgldk - TriplyDB

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

http://www.wikidata.org/entity/Q40010362

about

Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces A series of PDB related databases for everyday needs GPCRDB: information system for G protein-coupled receptors X-ray crystallography: Assessment and validation of protein-small molecule complexes for drug discovery.A new generation of crystallographic validation tools for the protein data bank Structure of human carbamoyl phosphate synthetase: deciphering the on/off switch of human ureagenesis Phosphorylation by PINK1 releases the UBL domain and initializes the conformational opening of the E3 ubiquitin ligase Parkin The role of Co2+in the crystallization of human SENP1 and comments on the limitations of automated refinement protocols Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER Using stable MutS dimers and tetramers to quantitatively analyze DNA mismatch recognition and sliding clamp formation.Structural and biochemical analyses of alanine racemase from the multidrug-resistantClostridium difficilestrain 630 Structural insights into bacterial resistance to cerulenin Towards automated crystallographic structure refinement with phenix.refine Detection of trans-cis flips and peptide-plane flips in protein structures Data publication with the structural biology data grid supports live analysis Operation of the Australian Store.Synchrotron for macromolecular crystallography Drug design for ever, from hype to hope Building a virtual ligand screening pipeline using free software: a survey A public database of macromolecular diffraction experiments.High accuracy of Karplus equations for relating three-bond J couplings to protein backbone torsion angles.An approach to creating a more realistic working model from a protein data bank entry Detection of unrealistic molecular environments in protein structures based on expected electron densities An Acrobatic Substrate Metamorphosis Reveals a Requirement for Substrate Conformational Dynamics in Trypsin Proteolysis.Bioinformatics Tools and Resources for Analyzing Protein Structures.Gaia: automated quality assessment of protein structure models Avoidable errors in deposited macromolecular structures: an impediment to efficient data mining.Unmet challenges of structural genomics The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries.Refinement of macromolecular structures against neutron data with SHELXL2013.Continuous mutual improvement of macromolecular structure models in the PDB and of X-ray crystallographic software: the dual role of deposited experimental data.Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank On the use of logarithmic scales for analysis of diffraction data.phenix.model_vs_data: a high-level tool for the calculation of crystallographic model and data statistics.Improved crystallographic structures using extensive combinatorial refinement NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.Accessible surfaces of beta proteins increase with increasing protein molecular mass more rapidly than those of other proteins Structure of glutathione S-transferase 1 from the major human hookworm parasite Necator americanus (Na-GST-1) in complex with glutathione.Identification and structural analysis of an L-asparaginase enzyme from guinea pig with putative tumor cell killing properties The PDB_REDO server for macromolecular structure model optimization.CSAR benchmark exercise of 2010: selection of the protein-ligand complexes.

P2860

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P2860

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

http://www.wikidata.org/entity/Q40010362

description

2009 nî lūn-bûn

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2009年の論文

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2009年学术文章

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2009年学术文章

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2009年学术文章

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2009年学术文章

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2009年学术文章

@zh-sg

2009年學術文章

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2009年學術文章

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2009年學術文章

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name

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

@en

type

label

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

@en

prefLabel

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

@en

P1433

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P356

S0021889809008784

P1433

Journal of Applied Crystallography

P1476

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

@en

P2093

Ana L Da Costa

http://www.w3.org/2001/XMLSchema#string

Ann-Charlott Berglund

http://www.w3.org/2001/XMLSchema#string

Christophe Blanchet

http://www.w3.org/2001/XMLSchema#string

Christophe Combet

http://www.w3.org/2001/XMLSchema#string

Eija Korpelainen

http://www.w3.org/2001/XMLSchema#string

Gert Vriend

http://www.w3.org/2001/XMLSchema#string

Géraldine Fettahi

http://www.w3.org/2001/XMLSchema#string

Jean Salzemann

http://www.w3.org/2001/XMLSchema#string

Kimmo Mattila

http://www.w3.org/2001/XMLSchema#string

Matteo Diarena

http://www.w3.org/2001/XMLSchema#string

P2860

Remediation of the protein data bank archive

pdb-care (PDB carbohydrate residue check): a program to support annotation of complex carbohydrate structures in PDB files

Crystallographic investigation of the role of aspartate 95 in the modulation of the redox potentials of Desulfovibrio vulgaris flavodoxin

Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor

Large increases in general stability for subtilisin BPN' through incremental changes in the free energy of unfolding

Use of TLS parameters to model anisotropic displacements in macromolecular refinement

Errors in protein structures

Optimal description of a protein structure in terms of multiple groups undergoing TLS motion

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

SHELXL: high-resolution refinement

P304

376-384

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1107/S0021889809008784

http://www.w3.org/2001/XMLSchema#string

P433

Pt 3

http://www.w3.org/2001/XMLSchema#string

P478

42

http://www.w3.org/2001/XMLSchema#string

P50

Heinz Stockinger

Robbie P. Joosten

Erik Bongcam-Rudloff

Gilbert Deleage

P577

2009-04-03T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P698

22477769

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P921

P932

3246819

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