Moving beyond Watson-Crick models of coarse grained DNA dynamics. - Wikidata - awgldk - TriplyDB

Moving beyond Watson-Crick models of coarse grained DNA dynamics.

Moving beyond Watson-Crick models of coarse grained DNA dynamics.

http://www.wikidata.org/entity/Q40042600

about

The power of coarse graining in biomolecular simulations.COFFDROP: A Coarse-Grained Nonbonded Force Field for Proteins Derived from All-Atom Explicit-Solvent Molecular Dynamics Simulations of Amino Acids DNA Duplex Formation with a Coarse-Grained Model Optimization of a Nucleic Acids united-RESidue 2-Point model (NARES-2P) with a maximum-likelihood approach An experimentally-informed coarse-grained 3-Site-Per-Nucleotide model of DNA: structure, thermodynamics, and dynamics of hybridization.Polymer translocation through nano-pores in vibrating thin membranes.Perspective: Coarse-grained models for biomolecular systems.Monte Carlo simulation algorithm for B-DNA.Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.A coarse-grained MARTINI-like force field for DNA unzipping in nanopores.The effects of multiple probes on the hybridization of target DNA on surfaces.Mesoscopic model for DNA G-quadruplex unfolding.Is DNA a Good Model Polymer?DNA hybridization kinetics: zippering, internal displacement and sequence dependence.Coarse-graining DNA for simulations of DNA nanotechnology.Exploring the mechanisms of DNA hybridization on a surface.Slow closure of denaturation bubbles in DNA: twist matters.An implicit divalent counterion force field for RNA molecular dynamics.Erratum: “Moving beyond Watson–Crick models of coarse grained DNA dynamics”.Sequence-dependent thermodynamics of a coarse-grained DNA model.The "sugar" coarse-grained DNA model.Multifunctional energy landscape for a DNA G-quadruplex: An evolved molecular switch.Insights into DNA-mediated interparticle interactions from a coarse-grained model.Denaturation and renaturation behaviors of short DNA in a confined space.Coarse-grained modeling of DNA oligomer hybridization: length, sequence, and salt effects.

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Moving beyond Watson-Crick models of coarse grained DNA dynamics.

http://www.wikidata.org/entity/Q40042600

description

2011 nî lūn-bûn

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年论文

@wuu

2011年论文

@zh

2011年论文

@zh-cn

name

Moving beyond Watson-Crick models of coarse grained DNA dynamics.

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type

label

Moving beyond Watson-Crick models of coarse grained DNA dynamics.

@en

prefLabel

Moving beyond Watson-Crick models of coarse grained DNA dynamics.

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P1433

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Journal of Chemical Physics

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Moving beyond Watson-Crick models of coarse grained DNA dynamics

@en

P2093

Margaret C Linak

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Richard Tourdot

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P2860

Solution structure of [d(ATGAGCGAATA)]2. Adjacent G:A mismatches stabilized by cross-strand base-stacking and BII phosphate groups

Crystal structure and stability of a DNA duplex containing A(anti).G(syn) base-pairs

Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations

G . T base-pairs in a DNA helix: the crystal structure of d(G-G-G-G-T-C-C-C)

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

In vitro selection of RNA molecules that bind specific ligands

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA.

PRIMO/PRIMONA: a coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy.

A semiflexible polymer model applied to loop formation in DNA hairpins.

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205102

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10.1063/1.3662137

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135

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Kevin D. Dorfman

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2011-11-01T00:00:00Z

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