Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.
about
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq dataInsights from genomic profiling of transcription factorsSystematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expressionErythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expressionThe histone demethylase UTX enables RB-dependent cell fate controlPMeS: prediction of methylation sites based on enhanced feature encoding schemeHuman Transcriptome and Chromatin Modifications: An ENCODE PerspectiveCorrelation Between DNase I Hypersensitive Site Distribution and Gene Expression in HeLa S3 CellsDiscovery and characterization of chromatin states for systematic annotation of the human genomeDouble error shrinkage method for identifying protein binding sites observed by tiling arrays with limited replicationSensitive and accurate identification of protein-DNA binding events in ChIP-chip assays using higher order derivative analysis.Statistical metrics for quality assessment of high-density tiling array data.Group normalization for genomic data.CLEAN: CLustering Enrichment ANalysis.A functional analysis of the CREB signaling pathway using HaloCHIP-chip and high throughput reporter assaysAn integrated software system for analyzing ChIP-chip and ChIP-seq dataEmpirical methods for controlling false positives and estimating confidence in ChIP-Seq peaksUtilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data.Adaptive variation regulates the expression of the human SGK1 gene in response to stressImproved ChIP-chip analysis by a mixture model approach.Comparison of sequence-dependent tiling array normalization approaches.Histone H3 lysine 27 methylation asymmetry on developmentally-regulated promoters distinguish the first two lineages in mouse preimplantation embryos.Comprehensive genomic screens identify a role for PLZF-RARalpha as a positive regulator of cell proliferation via direct regulation of c-MYCComments on sequence normalization of tiling array expressionChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip dataProtein post-translational modifications: In silico prediction tools and molecular modeling.A data integration approach to mapping OCT4 gene regulatory networks operative in embryonic stem cells and embryonal carcinoma cells.ChIP on Chip: surprising results are often artifacts.Quantized correlation coefficient for measuring reproducibility of ChIP-chip dataUsing ChIP-seq technology to identify targets of zinc finger transcription factors.LTR: Linear Cross-Platform Integration of Microarray DataEvaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variationW-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data.OccuPeak: ChIP-Seq peak calling based on internal background modellingTiling histone H3 lysine 4 and 27 methylation in zebrafish using high-density microarrays.MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq dataTiling array data analysis: a multiscale approach using waveletsChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.Chromatin environment of histone variant H3.3 revealed by quantitative imaging and genome-scale chromatin and DNA immunoprecipitation.JAMIE: joint analysis of multiple ChIP-chip experiments
P2860
Q24595121-5451447E-E0C5-40A0-BCC6-2BFB61E579C0Q24611607-7C75B408-D0A5-4351-A233-F6712EC362BBQ24634173-9E6C2886-8B6B-4D26-9892-F60EAF8A65CDQ28263560-2BF41055-F160-401B-A29F-130D1395E3A5Q28272073-6D6FC267-FB2A-4AAC-945D-8BCD17000FE2Q28480447-060857BE-72EB-477C-8D71-FCE88EFEA9E3Q28679909-E4326CB9-2EB0-448D-ABBB-E7F3CBD55EB3Q28972453-58B510BD-28B4-47C9-9536-29053EED533CQ29614411-99DADE6D-CBBE-4D29-BA2D-AA0408DD10B7Q30434603-FAF14A83-F6B5-4E52-AE29-EA07F7F0F355Q30476280-C3B09594-A2D6-4D89-9551-F059E34E2831Q30536635-93AE1F84-65BA-4A92-9E4C-1C21C8D90D1DQ30558698-8CFA1D40-4E63-485F-8750-D9D4EF1D2BA0Q30871275-A41E07FB-308E-4CFB-9FC6-17D2E8C932CCQ30876900-651A66BD-F9DD-4741-BF21-2FE52213BE39Q33382059-3656F0A0-B5B5-4A70-8F97-DB2AE4F6EB1AQ33390488-CD035DE3-CD1C-4FC2-8716-92214981FD0BQ33436132-45040473-25BE-415F-841A-49BA635D67BFQ33450579-E65897D7-97AB-43E9-A8D2-784F584CCE16Q33461968-FBF87900-23D9-41EE-9971-8EF450A4085DQ33476500-6A5673FA-83B8-4A34-BEF4-D3FC36911DDAQ33531789-BF221125-77A3-4732-88BB-9F9F2EB3FF33Q33560429-42294350-CF12-458E-8C51-4500C6191002Q33567054-C7FC6CEE-47A7-4C5A-82A6-4299F4CA6DD7Q33575507-9452B467-F430-45F9-A6E2-3C68A8C8D2D1Q33580119-901BCEFE-8BF2-4FB1-963D-8D0785AE0791Q33588536-936945AE-DC2E-4BD2-85FB-DA5949D2E818Q33625340-3A87A2DC-0C19-4425-8743-B2E3513C351DQ33642340-B803E9A8-A987-4D2F-BDC1-D46DA6827CF0Q33648141-38C7C9E8-03A7-416D-8D86-A95AE41AD6F0Q33691502-2D232294-E878-449D-A28A-ED510BA7AA88Q33736481-E116A077-9A87-42D4-847E-D4BF615C03B9Q33765389-1C54B0E2-4E2E-4CC0-9BF7-46187BABF360Q33768883-1D6925AD-EC75-48E2-9EA8-4A0A00A850D2Q33781152-7A2DEA44-F701-4197-8836-77448D75D925Q33809896-D8D86AEA-CC70-40CB-8F2A-D14294296EB6Q33825780-BAE7B5C4-2149-4750-BE8C-5C11DA203E1AQ33831056-02E6E330-7504-4BE8-AF9F-3EB553001640Q33881683-9616C4F2-47CC-4353-9D13-21856FC6478BQ34001423-86449196-0BCB-455E-83CF-AF5F5F6A0B3E
P2860
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
2008年论文
@zh
2008年论文
@zh-cn
name
Systematic evaluation of varia ...... using predefined DNA targets.
@en
type
label
Systematic evaluation of varia ...... using predefined DNA targets.
@en
prefLabel
Systematic evaluation of varia ...... using predefined DNA targets.
@en
P2093
P2860
P50
P356
P1433
P1476
Systematic evaluation of varia ...... using predefined DNA targets.
@en
P2093
Alexander Karpikov
Annie Yang
Arindam Bhattacharjee
Christoph M Koch
D Benjamin Gordon
David A Nix
David Hawkins
David S Johnson
P2860
P304
P356
10.1101/GR.7080508
P50
P577
2008-02-07T00:00:00Z