Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA.
about
Structure and energy of a DNA dodecamer under tensile loadClose encounters with DNAAssessing the Current State of Amber Force Field Modifications for DNAElectronic detection of dsDNA transition from helical to zipper conformation using graphene nanopores.Molecular force balance measurements reveal that double-stranded DNA unbinds under force in rate-dependent pathwaysMolecular dynamics of a kappaB DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulationModeling the early stage of DNA sequence recognition within RecA nucleoprotein filaments.The transition mechanism of DNA overstretching: a microscopic view using molecular dynamics.Stretched DNA investigated using molecular-dynamics and quantum-mechanical calculations.Biophysical characterization of DNA binding from single molecule force measurementsDNA curvature and flexibility in vitro and in vivo.The electromechanics of DNA in a synthetic nanopore.Equilibrium and kinetics of DNA overstretching modeled with a quartic energy landscapeAtomistic account of structural and dynamical changes induced by small binders in the double helix of a short DNA.Free-energy landscape and characteristic forces for the initiation of DNA unzippingMapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulationsThere and (slowly) back again: entropy-driven hysteresis in a model of DNA overstretching.Two-phase stretching of molecular chainsModelling the biomechanical properties of DNA using computer simulation.Simulation of the mechanical strength of a single collagen molecule.B-DNA to zip-DNA: simulating a DNA transition to a novel structure with enhanced charge-transport characteristicsDNA overstretching in the presence of glyoxal: structural evidence of force-induced DNA melting.Optical tweezers experiments resolve distinct modes of DNA-protein binding.Denaturation transition of stretched DNA.B-DNA characteristics are preserved in double stranded d(A)3·d(T)3 and d(G)3·d(C)3 mini-helixes: conclusions from DFT/M06-2X study.Minimalist model for force-dependent DNA replication.Modulation of T4 gene 32 protein DNA binding activity by the recombination mediator protein UvsY.Thermodynamic description of polymorphism in Q- and N-rich peptide aggregates revealed by atomistic simulation.A stretched conformation of DNA with a biological role?Overstretching of B-DNA with various pulling protocols: Appearance of structural polymorphism and S-DNA.Strain softening in stretched DNA.Local elasticity of strained DNA studied by all-atom simulations.Coarse-grained simulations of DNA overstretching.Direct evaluation of a kinetic model for RecA-mediated DNA-strand exchange: the importance of nucleic acid dynamics and entropy during homologous genetic recombination.Biomembrane force probe investigation of RNA dissociationSelf-assembling β-Sheet Tape Forming PeptidesMolecular dynamics study of DNA oligomers under angled pullingPulling of double-stranded DNA by atomic force microscopy: a simulation in atomistic details
P2860
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P2860
Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA.
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
2004年论文
@zh
2004年论文
@zh-cn
name
Molecular dynamics simulations ...... omechanical properties of DNA.
@en
type
label
Molecular dynamics simulations ...... omechanical properties of DNA.
@en
prefLabel
Molecular dynamics simulations ...... omechanical properties of DNA.
@en
P2860
P1433
P1476
Molecular dynamics simulations ...... omechanical properties of DNA.
@en
P2093
Charles A Laughton
Zara A Sands
P2860
P304
P356
10.1529/BIOPHYSJ.104.046912
P407
P577
2004-12-30T00:00:00Z