AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome. - Wikidata - awgldk - TriplyDB

AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome.

AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome.

http://www.wikidata.org/entity/Q40403083

about

MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes AthaMap web tools for database-assisted identification of combinatorial cis-regulatory elements and the display of highly conserved transcription factor binding sites in Arabidopsis thaliana Functional Analysis of the Arabidopsis TETRASPANIN Gene Family in Plant Growth and Development Isolation, Expression, and Promoter Analysis of GbWRKY2: A Novel Transcription Factor Gene from Ginkgo biloba SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways PromoterCAD: Data-driven design of plant regulatory DNA.Boosting AthaMap Database Content with Data from Protein Binding Microarrays.PathoPlant: a platform for microarray expression data to analyze co-regulated genes involved in plant defense responses PlnTFDB: an integrative plant transcription factor database.Identification of plant promoter constituents by analysis of local distribution of short sequences Integrating long-day flowering signals: a LEAFY binding site is essential for proper photoperiodic activation of APETALA1.LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1 Gene coexpression patterns during early development of the native Arabidopsis reproductive meristem: novel candidate developmental regulators and patterns of functional redundancy.Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development.AthaMap, integrating transcriptional and post-transcriptional data Evolution of MIR168 paralogs in Brassicaceae.A small intergenic region drives exclusive tissue-specific expression of the adjacent genes in Arabidopsis thaliana.Regulatory network rewiring for secondary metabolism in Arabidopsis thaliana under various conditions Characterization of putative cis-regulatory elements in genes preferentially expressed in Arabidopsis male meiocytes.Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.Integrating bioinformatic resources to predict transcription factors interacting with cis-sequences conserved in co-regulated genes.Lipopolysaccharide perception leads to dynamic alterations in the microtranscriptome of Arabidopsis thaliana cells and leaf tissues Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.Integrating circadian and gibberellin signaling in Arabidopsis: possible links between the circadian clock and the AtGID1 transcription.Mapping and analysis of simple sequence repeats in the Arabidopsis thaliana genome.ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage.SUMO proteases ULP1c and ULP1d are required for development and osmotic stress responses in Arabidopsis thaliana.Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters.STIF: Identification of stress-upregulated transcription factor binding sites in Arabidopsis thaliana Internet Resources for Gene Expression Analysis in Arabidopsis thaliana.Functional Roles of microRNAs in Agronomically Important Plants-Potential as Targets for Crop Improvement and Protection.Integration of bioinformatics and synthetic promoters leads to the discovery of novel elicitor-responsive cis-regulatory sequences in Arabidopsis.A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants.Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa).AthaMap web tools for the analysis and identification of co-regulated genes.The Transcription Factor MYB29 Is a Regulator of ALTERNATIVE OXIDASE1a.Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis.AthaMap-assisted transcription factor target gene identification in Arabidopsis thaliana ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.

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AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome.

http://www.wikidata.org/entity/Q40403083

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Claudia Galuschka

http://www.w3.org/2001/XMLSchema#string

Lorenz Bülow

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Martin Schindler

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Nils Ole Steffens

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Reinhard Hehl

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P2860

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

A cdc5+ homolog of a higher plant, Arabidopsis thaliana

RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants

MATCH: A tool for searching transcription factor binding sites in DNA sequences

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors

TRANSFAC: transcriptional regulation, from patterns to profiles

MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data

TRANSFAC: an integrated system for gene expression regulation.

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

Novel anther-specific myb genes from tobacco as putative regulators of phenylalanine ammonia-lyase expression.

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10.1093/NAR/GKH017

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Database issue

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32

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Arabidopsis thaliana

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308752

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