Annotation transfer for genomics: measuring functional divergence in multi-domain proteins.
about
Human Lsg1 defines a family of essential GTPases that correlates with the evolution of compartmentalization.Identification of genes encoding tRNA modification enzymes by comparative genomicsThe FunCat, a functional annotation scheme for systematic classification of proteins from whole genomesGOtcha: a new method for prediction of protein function assessed by the annotation of seven genomesFunctional coverage of the human genome by existing structures, structural genomics targets, and homology models.Structural and functional characterization of a ruminal β-glycosidase defines a novel subfamily of glycosyl hydrolase family 3 with permuted domain topologyHHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignmentAnnotation transfer between genomes: protein-protein interologs and protein-DNA regulogsProtein structure and evolutionary history determine sequence space topologyExploring the structure and function paradigm.SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA DataThe SUPERFAMILY database in 2004: additions and improvementsHomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms.High precision multi-genome scale reannotation of enzyme function by EFICAz.Comprehensive analysis of co-occurring domain sets in yeast proteins.On the detection of functionally coherent groups of protein domains with an extension to protein annotation.The comparative analysis of statistics, based on the likelihood ratio criterion, in the automated annotation problem.Analyses of domains and domain fusions in human proto-oncogenesHangOut: generating clean PSI-BLAST profiles for domains with long insertionsIdentification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection.Predicting DNA-binding specificities of eukaryotic transcription factorsDetecting remotely related proteins by their interactions and sequence similarityComparison of human solute carriersEffective function annotation through catalytic residue conservation.Bio::Homology::InterologWalk--a Perl module to build putative protein-protein interaction networks through interolog mapping.Domain architecture conservation in orthologs.Diversity in the architecture of ATLs, a family of plant ubiquitin-ligases, leads to recognition and targeting of substrates in different cellular environmentsFastAnnotator--an efficient transcript annotation web tool.Protein domain analysis in the era of complete genomes.Predicting gene ontology functions from ProDom and CDD protein domains.Genome and proteome annotation: organization, interpretation and integration.Cyanobacterial two-component proteins: structure, diversity, distribution, and evolution.Active site profiling to identify protein functional sites in sequences and structures using the Deacon Active Site Profiler (DASP).Rapid similarity search of proteins using alignments of domain arrangements.Bacterial regulatory networks are extremely flexible in evolution.kClust: fast and sensitive clustering of large protein sequence databases.Automatic prediction of polysaccharide utilization loci in Bacteroidetes species.Scrutinizing the immune defence inventory of Camponotus floridanus applying total transcriptome sequencingStructural characterization of the human proteome.Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum
P2860
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P2860
Annotation transfer for genomics: measuring functional divergence in multi-domain proteins.
description
2001 nî lūn-bûn
@nan
2001年の論文
@ja
2001年学术文章
@wuu
2001年学术文章
@zh-cn
2001年学术文章
@zh-hans
2001年学术文章
@zh-my
2001年学术文章
@zh-sg
2001年學術文章
@yue
2001年學術文章
@zh
2001年學術文章
@zh-hant
name
Annotation transfer for genomi ...... ence in multi-domain proteins.
@en
type
label
Annotation transfer for genomi ...... ence in multi-domain proteins.
@en
prefLabel
Annotation transfer for genomi ...... ence in multi-domain proteins.
@en
P2860
P356
P1433
P1476
Annotation transfer for genomi ...... ence in multi-domain proteins.
@en
P2093
P2860
P304
P356
10.1101/GR. 183801
P577
2001-10-01T00:00:00Z