Conformational transition pathways explored by Monte Carlo simulation integrated with collective modes.
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Exploring the conformational transitions of biomolecular systems using a simple two-state anisotropic network modelLigand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible ProteinsPre-existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteinsTowards the prediction of order parameters from molecular dynamics simulations in proteins.Zipping and unzipping of adenylate kinase: atomistic insights into the ensemble of open<-->closed transitions.ClustENM: ENM-Based Sampling of Essential Conformational Space at Full Atomic Resolution.Structural basis for cooperative oxygen binding and bracelet-assisted assembly of Lumbricus terrestris hemoglobin.Understanding ligand-receptor non-covalent binding kinetics using molecular modeling.Instantaneous normal modes as an unforced reaction coordinate for protein conformational transitionsElucidating the ensemble of functionally-relevant transitions in protein systems with a robotics-inspired method.Biomolecular dynamics: order-disorder transitions and energy landscapesFeatures of large hinge-bending conformational transitions. Prediction of closed structure from open state.On the functional significance of soft modes predicted by coarse-grained models for membrane proteins.Global transitions of proteins explored by a multiscale hybrid methodology: application to adenylate kinase.Changes in electrostatic surface potential of Na+/K+-ATPase cytoplasmic headpiece induced by cytoplasmic ligand(s) binding.Systematic Dissociation Pathway Searches Guided by Principal Component Modes.Hamiltonian replica exchange combined with elastic network analysis to enhance global domain motions in atomistic molecular dynamics simulations.Cofilin reduces the mechanical properties of actin filaments: approach with coarse-grained methods.Sampling large conformational transitions: adenylate kinase as a testing ground
P2860
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P2860
Conformational transition pathways explored by Monte Carlo simulation integrated with collective modes.
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
2008年论文
@zh
2008年论文
@zh-cn
name
Conformational transition path ...... egrated with collective modes.
@en
type
label
Conformational transition path ...... egrated with collective modes.
@en
prefLabel
Conformational transition path ...... egrated with collective modes.
@en
P2093
P2860
P1433
P1476
Conformational transition path ...... egrated with collective modes.
@en
P2093
Nigar Kantarci-Carsibasi
Pemra Doruker
Turkan Haliloglu
P2860
P304
P356
10.1529/BIOPHYSJ.107.128447
P407
P577
2008-08-01T00:00:00Z