about
High Resolution NMR-based Model for the Structure of a scFv-IL-1 Complex: POTENTIAL FOR NMR AS A KEY TOOL IN THERAPEUTIC ANTIBODY DESIGN AND DEVELOPMENTMemoir: template-based structure prediction for membrane proteinsSequence-structure homology recognition by iterative alignment refinement and comparative modeling.Helix kinks are equally prevalent in soluble and membrane proteins.iMembrane: homology-based membrane-insertion of proteins.Real-time visualization of clustering and intracellular transport of gold nanoparticles by correlative imaging.Gold-nanoparticle-mediated jigsaw-puzzle-like assembly of supersized plasmonic DNA origami.MEDELLER: homology-based coordinate generation for membrane proteinsAnalysis and modeling of the variable region of camelid single-domain antibodies.Examining variable domain orientations in antigen receptors gives insight into TCR-like antibody design.DNA-directed assembly of gold nanohalo for quantitative plasmonic imaging of single-particle catalysis.Effects of drug-resistant mutations on the dynamic properties of HIV-1 protease and inhibition by Amprenavir and Darunavir.Multi-algorithm and multi-model based drug target prediction and web server.Smart drug delivery nanocarriers with self-assembled DNA nanostructures.Nanoscale optical probes for cellular imaging.Force fields and scoring functions for carbohydrate simulation.SAbDab: the structural antibody database.Recent progress in natural products as DPP-4 inhibitors.Electrochemical detection of nucleic acids, proteins, small molecules and cells using a DNA-nanostructure-based universal biosensing platform.Discovery of N-substituted 3-arylisoquinolone derivatives as antitumor agents originating from O-substituted 3-arylisoquinolines via [2,3] or [3,3] rearrangement.Self-assembly of poly-adenine-tailed CpG oligonucleotide-gold nanoparticle nanoconjugates with immunostimulatory activity.Characterization of the interaction of sclerostin with the low density lipoprotein receptor-related protein (LRP) family of Wnt co-receptors.Fragment-based modeling of membrane protein loops: successes, failures, and prospects for the future.Like-Charge Guanidinium Pairing between Ligand and Receptor: An Unusual Interaction for Drug Discovery and Design?Evolutionary trace analysis of TGF-beta and related growth factors: implications for site-directed mutagenesis.A quantum mechanics-based halogen bonding scoring function for protein-ligand interactions.Thermodynamics calculation of protein-ligand interactions by QM/MM polarizable charge parameters.Improving B-cell epitope prediction and its application to global antibody-antigen docking.A bubble-mediated intelligent microscale electrochemical device for single-step quantitative bioassays.Environment specific substitution tables improve membrane protein alignment.Molecular dynamics simulation indicating cold denaturation of β-hairpins.Antibody i-Patch prediction of the antibody binding site improves rigid local antibody-antigen docking.ABangle: characterising the VH-VL orientation in antibodies.The universality of β-hairpin misfolding indicated by molecular dynamics simulations.Hybridization chain reaction amplification of microRNA detection with a tetrahedral DNA nanostructure-based electrochemical biosensor.Pattern recognition analysis of proteins using DNA-decorated catalytic gold nanoparticles.Real time in vitro regulation of DNA methylation using a 5-fluorouracil conjugated DNA-based stimuli-responsive platform.Crowdsourcing yields a new standard for kinks in protein helices.Size-dependent programming of the dynamic range of graphene oxide-DNA interaction-based ion sensors.Increasing the sampling efficiency of protein conformational transition using velocity-scaling optimized hybrid explicit/implicit solvent REMD simulation.
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P50
description
researcher
@en
wetenschapper
@nl
հետազոտող
@hy
name
Jiye Shi
@ast
Jiye Shi
@en
Jiye Shi
@es
Jiye Shi
@nl
Jiye Shi
@sl
type
label
Jiye Shi
@ast
Jiye Shi
@en
Jiye Shi
@es
Jiye Shi
@nl
Jiye Shi
@sl
prefLabel
Jiye Shi
@ast
Jiye Shi
@en
Jiye Shi
@es
Jiye Shi
@nl
Jiye Shi
@sl
P1053
G-2745-2012
P106
P2456
P2798
P31
P3829
P496
0000-0002-9628-8680